NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103775_102813

Scaffold Ga0103775_102813


Overview

Basic Information
Taxon OID3300008572 Open in IMG/M
Scaffold IDGa0103775_102813 Open in IMG/M
Source Dataset NameMicrobial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-N
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCentre National de la Recherche Scientifique (CNRS)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)762
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France

Source Dataset Sampling Location
Location NameChamps-sur-Marne, France
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046876Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0103775_1028131F046876N/AQNKNTPWDSSGSVTTVNWNKYNVFQFYDPNIHTLFRAVKDMTLDACKHYGLDFNKEQFMVQGWFNVNYNHIGKLDWHEHGGEGAPHFHGYYCVKAEPSVTHYRVFENEIENHNKNNRAILSETGHPHAMGDWDWEGPRITIAYDVIPLRLIPREWEQHWIPLV*

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