3300008572: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-N

Overview

Basic Information

• IMG/M Taxon OID: 3300008572
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117973 | Gp0126364 | Ga0103775
• Sample Name: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-N
• Sequencing Status: Permanent Draft
• Sequencing Center: Centre National de la Recherche Scientifique (CNRS)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24190424
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetes incertae sedis → ac1 cluster → Actinobacteria bacterium BACL2 MAG-120820-bin50	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Champs-sur-Marne, France
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000191	Metagenome / Metatranscriptome	1666	Y
F015952	Metagenome / Metatranscriptome	251	Y
F038004	Metagenome / Metatranscriptome	167	Y
F042867	Metagenome / Metatranscriptome	157	Y
F046876	Metagenome / Metatranscriptome	150	Y
F057131	Metagenome / Metatranscriptome	136	Y
F058094	Metagenome / Metatranscriptome	135	Y
F060948	Metagenome / Metatranscriptome	132	Y
F076150	Metagenome / Metatranscriptome	118	Y
F082580	Metagenome / Metatranscriptome	113	N
F082584	Metagenome / Metatranscriptome	113	Y
F085203	Metagenome / Metatranscriptome	111	Y
F087193	Metagenome / Metatranscriptome	110	Y
F105025	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103775_100311	Not Available	2086
Ga0103775_100794	Not Available	1399
Ga0103775_101021	Not Available	1244
Ga0103775_102013	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	907
Ga0103775_102813	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	762
Ga0103775_103802	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	656
Ga0103775_104196	Not Available	625
Ga0103775_104343	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	614
Ga0103775_104487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetes incertae sedis → ac1 cluster → Actinobacteria bacterium BACL2 MAG-120820-bin50	605
Ga0103775_104847	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	581
Ga0103775_105170	Not Available	563
Ga0103775_105547	Not Available	544

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103775_100127	Ga0103775_1001271	F000191	SGYTVGDLVNQHVRFIEPGGKRPLMTYEKALNRPSQGQEIPDFD*
Ga0103775_100311	Ga0103775_1003111	F082584	MAIQLLRSTVSGRVPTSAQVAQGALAINLADRRLFSKDHNNEVFRIARPRDPSDYQLLHHVDGNNAYLGRLAWSDYPATGSPEDSTAWVIYRISTNSAGDVVSEQSATGAWSNKTSLNFS
Ga0103775_100794	Ga0103775_1007941	F105025	MDHHQATASFTGLVATATGLTVSLLPEIEAWLRIASLLIGCAVGLASFAVIVRNWTKN
Ga0103775_101021	Ga0103775_1010212	F058094	MSQIAFDPLTGNMISTTAQVAQLDSSGQVSSSMIPDDFDDVQRFDSVADFPPEGVVARIYFPADTNIPHRWDPPTLSYIPIVSDSDGGEF*
Ga0103775_102013	Ga0103775_1020131	F057131	DLFQQKLERLEAEVKKMGYHIHRNEQAIAYAKVEELLGSISDIQTLLNTEHQD*
Ga0103775_102813	Ga0103775_1028131	F046876	QNKNTPWDSSGSVTTVNWNKYNVFQFYDPNIHTLFRAVKDMTLDACKHYGLDFNKEQFMVQGWFNVNYNHIGKLDWHEHGGEGAPHFHGYYCVKAEPSVTHYRVFENEIENHNKNNRAILSETGHPHAMGDWDWEGPRITIAYDVIPLRLIPREWEQHWIPLV*
Ga0103775_103429	Ga0103775_1034291	F085203	IFASPAVKAVIKRMDGILKRKPKQAFDLWRRYVQAVNNKEFLDGVKSRELKAKLDKVARRTLRDATERILGDGSKVKGAIKKIYMAMQRMPKVALEKWRKYLQGLKDKSFFDNLRSAKLLNCLSRIPTRRTRDAAQRILGGGNKIKGCLQNLINGLKNIPKKALRRWNKTVDDIKNKRLYDNARSAKLLNALEKIQRRTMKEAADRCIGFIFASPAVKAVIKRMDGILKR
Ga0103775_103802	Ga0103775_1038022	F015952	MSKNSARSMYTQLMEWIPTLGRTVVPKKEQSQSKFSKADHYKSKGAYGKAGN*
Ga0103775_104196	Ga0103775_1041962	F038004	MAVKLGSMDTHIVLTALWDYRETLTDFDEAPPNPQVDEKIQRVDRLIKHYKQSFFALDRLGIY*
Ga0103775_104343	Ga0103775_1043432	F087193	MAVQRATEFETLRVLYTLWKNRDIDIVQVKNILNENYGLELTVLTNGEITAQSLDGKTKYSIK*
Ga0103775_104487	Ga0103775_1044872	F042867	MYGAVSDVAPRQVVTPLAVVHTGFALATVGAATSRDAASAVPATSVKERLNLKFLMSYLVILSLA
Ga0103775_104847	Ga0103775_1048471	F060948	ITLIIAVNIMNTFFLNLGKFYWWLFTDKNLNSDTLIRLAYGHYVSAFFLFYLGVLHSFDMHYD*
Ga0103775_105170	Ga0103775_1051701	F082580	IIFIFDKTLIMKGDKYWASNPKKNGSYLGQGRVEGRPASINSLKEDMSCACKPGFKLMYKNTKDKKYCD*
Ga0103775_105547	Ga0103775_1055471	F076150	NAVGKLVRRTGNVGCQFEVGTPRGITRRNYAKNKIIQFYYCEFHYDRVLKTERYVRVQVVLLPTLMIPYQRNCFEVILMYGNGDISQSS*