Scaffold Ga0111033_1106048

Overview

Basic Information

• Taxon OID: 3300008516
• Scaffold ID: Ga0111033_1106048
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14165
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019930	Metagenome / Metatranscriptome	227	Y
F084899	Metagenome	112	Y
F089825	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111033_110604811	F019930	N/A	MRKLNLKNYTVIVDVPDQMNQGQLMKAELPYQVKTSLLNLMFIPDLQLNGAELVKQNVLAMKLETCKEDEILLEDEEYNRIKRAIDTFKGFGRNDVELVTRINEAEVVEVKSK*
Ga0111033_110604816	F084899	AGGA	MTEEQKDIELKKELDRIDWHLDYGSIKIQIRQGKPTLITIERTVKLD*
Ga0111033_11060489	F089825	AGGAGG	MGSAIDFPWEKVNVIADAIVHTGPCVLHSIVCNGMTAVGDVAIYDGVTAGGTLIGTLILRSAVQVSCQPFTALYDCEMDVGIFIDYDGAFAGNFTVMFK*