Metagenome Family F084899

Overview

Basic Information

• Family ID: F084899
• Family Type: Metagenome
• Number of Sequences: 112
• Average Sequence Length: 48 residues
• Representative Sequence: MTDKDQELKKELEKIDWPIEYGSVKIQIRNGKPSLITIERTVKLD
• Number of Associated Samples: 38
• Number of Associated Scaffolds: 112

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 70.48 %
• % of genes near scaffold ends (potentially truncated): 16.07 %
• % of genes from short scaffolds (< 2000 bps): 67.86 %
• Associated GOLD sequencing projects: 34
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (83.036 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater (42.857 % of family members)
• Environment Ontology (ENVO): Unclassified (42.857 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline) (67.857 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 15.07%
  β-sheet: 23.29%
  Coil/Unstructured: 61.64%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF04233	Phage_Mu_F	26.79
PF06150	ChaB	25.89
PF08241	Methyltransf_11	2.68
PF01844	HNH	2.68
PF04545	Sigma70_r4	1.79
PF03237	Terminase_6N	0.89
PF03592	Terminase_2	0.89
PF09956	DUF2190	0.89
PF00961	LAGLIDADG_1	0.89
PF10055	DUF2292	0.89
PF01921	tRNA-synt_1f	0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG4572	Cation transport regulator ChaB	Inorganic ion transport and metabolism [P]	25.89
COG1384	Lysyl-tRNA synthetase, class I	Translation, ribosomal structure and biogenesis [J]	0.89
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.89

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
All Organisms	root	All Organisms	16.96 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
cellular organisms	root	All Organisms → cellular organisms	8.93 %
Viruses	superkingdom	All Organisms → Viruses	8.04 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.14 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.89 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.89 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.89 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.14 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.79 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.89 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.89 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.14 %
Ardenticatenia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia	1.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.89 %
unclassified candidate division Zixibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria	0.89 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.14 %
Ardenticatenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales	1.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
candidate division Zixibacteria bacterium SM1_73	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium SM1_73	0.89 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.89 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.14 %
Ardenticatenaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales → Ardenticatenaceae	1.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Podoviridae sp. ctviO18	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctviO18	0.89 %
candidate division Zixibacteria bacterium SM1_73	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium SM1_73	0.89 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.14 %
Candidatus Promineofilum	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales → Ardenticatenaceae → Candidatus Promineofilum	1.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Podoviridae sp. ctviO18	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctviO18	0.89 %
candidate division Zixibacteria bacterium SM1_73	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium SM1_73	0.89 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	83.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.14 %
Candidatus Promineofilum breve	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales → Ardenticatenaceae → Candidatus Promineofilum → Candidatus Promineofilum breve	1.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.79 %
Podoviridae sp. ctviO18	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctviO18	0.89 %
candidate division Zixibacteria bacterium SM1_73	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium SM1_73	0.89 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2140918027|GQKUMWE02FU5X2	Not Available	502
3300005823|Ga0078745_1017973	All Organisms → cellular organisms → Bacteria	2351
3300005918|Ga0075116_10194477	Not Available	767
3300005935|Ga0075125_10294506	Not Available	645
3300005935|Ga0075125_10321061	Not Available	610
3300008516|Ga0111033_1106048	All Organisms → cellular organisms → Bacteria	14165
3300008516|Ga0111033_1220447	Not Available	3590
3300008517|Ga0111034_1086717	Not Available	12248
3300008517|Ga0111034_1258907	Not Available	2574
3300009034|Ga0115863_1069699	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium SM1_73	4448
3300009136|Ga0118735_10061749	Not Available	1147
3300009149|Ga0114918_10033625	Not Available	3626
3300009149|Ga0114918_10731581	Not Available	517
3300009488|Ga0114925_10326394	Not Available	1047
3300009499|Ga0114930_10114134	Not Available	1481
3300009499|Ga0114930_10377060	Not Available	661
3300009528|Ga0114920_10010241	Not Available	4983
3300009528|Ga0114920_10390745	Not Available	944
3300009529|Ga0114919_10047628	Not Available	3181
3300009529|Ga0114919_10137932	Not Available	1759
3300009529|Ga0114919_10241138	Not Available	1281
3300009529|Ga0114919_10295183	All Organisms → Viruses → Predicted Viral	1139
3300009529|Ga0114919_10295268	Not Available	1138
3300009529|Ga0114919_10431401	Not Available	914
3300009529|Ga0114919_10456296	Not Available	885
3300009529|Ga0114919_10504005	Not Available	835
3300009529|Ga0114919_10540508	Not Available	801
3300009529|Ga0114919_10656910	Not Available	716
3300009529|Ga0114919_10725039	Not Available	676
3300009529|Ga0114919_11007843	Not Available	560
3300009529|Ga0114919_11033727	Not Available	552
3300009529|Ga0114919_11100553	Not Available	533
3300009529|Ga0114919_11121554	Not Available	527
3300011118|Ga0114922_11441331	Not Available	554
(restricted) 3300013130|Ga0172363_10571200	Not Available	718
3300014613|Ga0180008_1001331	Not Available	15845
3300014613|Ga0180008_1012710	Not Available	3586
3300014613|Ga0180008_1018855	All Organisms → Viruses → Predicted Viral	2866
3300014613|Ga0180008_1021091	Not Available	2697
3300014613|Ga0180008_1029811	Not Available	2225
3300014613|Ga0180008_1031846	Not Available	2146
3300014613|Ga0180008_1058663	Not Available	1532
3300014613|Ga0180008_1063773	Not Available	1462
3300014613|Ga0180008_1069781	Not Available	1391
3300014613|Ga0180008_1086233	Not Available	1235
3300014613|Ga0180008_1137060	Not Available	951
3300014613|Ga0180008_1138266	Not Available	947
3300014613|Ga0180008_1164558	Not Available	858
3300014613|Ga0180008_1239210	Not Available	693
3300014613|Ga0180008_1297593	Not Available	612
3300014613|Ga0180008_1324953	Not Available	582
3300014613|Ga0180008_1371525	Not Available	540
3300014613|Ga0180008_1379304	Not Available	534
3300014613|Ga0180008_1402605	Not Available	516
3300014613|Ga0180008_1403637	Not Available	516
3300014613|Ga0180008_1413594	Not Available	508
3300014656|Ga0180007_10026366	All Organisms → Viruses → Predicted Viral	4530
3300014656|Ga0180007_10027171	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctviO18	4441
3300014656|Ga0180007_10045562	All Organisms → cellular organisms → Bacteria	3188
3300014656|Ga0180007_10212182	Not Available	1226
3300014656|Ga0180007_10215228	Not Available	1216
3300014656|Ga0180007_10238647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales → Ardenticatenaceae → Candidatus Promineofilum → Candidatus Promineofilum breve	1142
3300014656|Ga0180007_10301431	Not Available	991
3300014656|Ga0180007_10351629	All Organisms → cellular organisms → Bacteria	903
3300014656|Ga0180007_10359958	Not Available	891
3300014656|Ga0180007_10397624	Not Available	839
3300014656|Ga0180007_10529014	Not Available	708
3300014656|Ga0180007_10653954	Not Available	625
3300014656|Ga0180007_10678007	Not Available	612
3300014656|Ga0180007_10858683	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	534
3300020171|Ga0180732_1000805	Not Available	22885
3300020171|Ga0180732_1014453	All Organisms → Viruses → Predicted Viral	3041
3300020171|Ga0180732_1040658	Not Available	1571
3300020171|Ga0180732_1054734	All Organisms → Viruses → Predicted Viral	1304
3300020171|Ga0180732_1062157	Not Available	1205
3300020171|Ga0180732_1109900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ardenticatenia → Ardenticatenales → Ardenticatenaceae → Candidatus Promineofilum → Candidatus Promineofilum breve	849
3300020171|Ga0180732_1121268	Not Available	801
3300020171|Ga0180732_1127908	Not Available	776
3300020171|Ga0180732_1170291	Not Available	654
3300020171|Ga0180732_1185734	Not Available	622
3300024262|Ga0210003_1000345	All Organisms → cellular organisms → Bacteria	41549
3300024353|Ga0209979_1135193	Not Available	946
3300024433|Ga0209986_10057935	Not Available	2256
(restricted) 3300024519|Ga0255046_10173833	Not Available	967
3300025736|Ga0207997_1056706	Not Available	1408
(restricted) 3300027881|Ga0255055_10032790	All Organisms → Viruses → Predicted Viral	2940
(restricted) 3300027881|Ga0255055_10143902	Not Available	1307
3300027896|Ga0209777_10516694	Not Available	878
3300029288|Ga0265297_10380342	Not Available	954
3300031227|Ga0307928_10222817	Not Available	987
3300031227|Ga0307928_10292910	Not Available	811
3300031227|Ga0307928_10536077	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	515
3300031278|Ga0307431_1008365	Not Available	4219
3300031351|Ga0307427_1071785	Not Available	896
3300031539|Ga0307380_10028348	Not Available	6525
3300031539|Ga0307380_10068090	All Organisms → Viruses → Predicted Viral	3806
3300031539|Ga0307380_10215497	Not Available	1842
3300031565|Ga0307379_10664768	Not Available	942
3300031566|Ga0307378_10140968	Not Available	2443
3300031566|Ga0307378_10242244	Not Available	1741
3300031578|Ga0307376_10942573	Not Available	524
3300031586|Ga0315541_1001640	Not Available	20163
3300031673|Ga0307377_10086959	All Organisms → Viruses → Predicted Viral	2558
3300031673|Ga0307377_10388997	Not Available	1038
3300031673|Ga0307377_10566170	Not Available	818

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Engineered	Engineered	0.89%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	89.29%
Terrestrial	Environmental → Terrestrial	9.82%
Solid Waste	Engineered → Solid Waste	0.89%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	44.64%
Marine	Environmental → Aquatic → Marine	36.61%
Soil	Environmental → Terrestrial → Soil	9.82%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	7.14%
Sediment	Environmental → Aquatic → Sediment	0.89%
Landfill	Engineered → Solid Waste → Landfill	0.89%

Type

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	42.86%
Oceanic	Environmental → Aquatic → Marine → Oceanic	25.00%
Clay	Environmental → Terrestrial → Soil → Clay	9.82%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	6.25%
Coastal	Environmental → Aquatic → Marine → Coastal	4.46%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.46%
Inlet	Environmental → Aquatic → Marine → Inlet	1.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.89%
Lake	Environmental → Aquatic → Freshwater → Lake	0.89%
Strait	Environmental → Aquatic → Marine → Strait	0.89%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	0.89%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	42.86%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	25.00%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	9.82%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	6.25%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	4.46%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	3.57%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.89%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.89%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	0.89%

Habitat

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	42.86%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	24.11%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	9.82%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	4.46%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	3.57%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	2.68%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.79%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.79%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	1.79%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.89%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.89%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.89%
Sediment, Intertidal	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Sediment, Intertidal	0.89%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.89%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline	0.89%
Marine Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment	0.89%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	0.89%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2140918027	Hypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool	Environmental
3300005823	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, MM2	Environmental
3300005918	Saline lake microbial communities from Ace Lake, Antarctica- Antarctic Ace Lake Metagenome 02UKC	Environmental
3300005935	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN	Environmental
3300008516	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3	Environmental
3300008517	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4	Environmental
3300009034	Intertidal mud flat sediment archaeal communities from Garolim Bay, Chungcheongnam-do, Korea	Environmental
3300009136	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsf	Environmental
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental
3300009488	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG	Environmental
3300009499	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG	Environmental
3300009528	Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG	Environmental
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental
3300014613	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG	Environmental
3300014656	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG	Environmental
3300020171	Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG	Environmental
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental
3300024353	Deep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)	Environmental
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental
3300024519 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27	Environmental
3300024995	Groundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10 (SPAdes)	Environmental
3300025736	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)	Environmental
3300027881 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27	Environmental
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental
3300027901	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)	Environmental
3300029288	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91	Engineered
3300031227	Saline water microbial communities from Ace Lake, Antarctica - #232	Environmental
3300031278	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-170	Environmental
3300031351	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-190	Environmental
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental
3300031553	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-240	Environmental
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental
3300031586	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-190	Environmental
3300031673	Soil microbial communities from Risofladan, Vaasa, Finland - TR-3	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ADL36m2_04158330	2140918027	Hypersaline	MTERLEIQDPQDAELKKELEGVNWHLEYGSVKIQIRNGKVTLLTVERTIKVD
Ga0078745_10179733	3300005823	Marine Sediment	MTEEQKDLELKKELDKIDWHLDYGSVKIQIRQGKPTLVTIERTVKLD*
Ga0075116_101944772	3300005918	Saline Lake	MRPGAGEVAEMMERLEIQNQQDIKLKKELEKIDWKLDYGSVKIQIRNGKPSLVTIERTVKLD*
Ga0075125_102945061	3300005935	Saline Lake	MTDIELKKELEKINWPIEYGTIKVQIRNGKPTLITIERTVKLD*
Ga0075125_103210613	3300005935	Saline Lake	MTDAELADQLKKVNWPIKYGTVKVQIRNGVPTLVTIEETVKLD*
Ga0111033_110604816	3300008516	Marine Sediment	MTEEQKDIELKKELDRIDWHLDYGSIKIQIRQGKPTLITIERTVKLD*
Ga0111033_12204474	3300008516	Marine Sediment	MIDWLEIQSQQDEELKRQLDKILWNLHYGSVKIQIRQGKVTLLVIERTVRLD*
Ga0111034_108671726	3300008517	Marine Sediment	MIDKDTELRKELEKVNWLKFLEYGIIKVQVRAGKPTLITIERTVKLD*
Ga0111034_12589071	3300008517	Marine Sediment	MTETQQDLELKKELEKIDWPIDYGSVKIQIRNGKPTLITIERTVK
Ga0115863_10696994	3300009034	Sediment, Intertidal	MTEQDAELKKQLDQIDWPIDYGSVKIQIRNGEPSLITIERTIKLD*
Ga0118735_100617492	3300009136	Marine Sediment	VAEKLEIQNQQDIELKKELEKVKWNLDFGSVKIQLRNGKPTLVTIERTVKLD*
Ga0114918_100336254	3300009149	Deep Subsurface	MTERVAIQNQEDVSLKKQIEQIDWQIDYGCVKIQLRAGKPTLITIERTVKLD*
Ga0114918_107315813	3300009149	Deep Subsurface	MLSEELRRELERIDWRLDYGSVKIQIRDGKATLITIERTVRLDVKA*
Ga0114925_103263941	3300009488	Deep Subsurface	MPEIEDDLKKELEKIDWHLDFGSVKVQIRNGKPSLITIERTIKLD*
Ga0114925_109967301	3300009488	Deep Subsurface	KHLEKVTWPIEYGIISIQLRAGKPTLIKVERTIKLD*
Ga0114930_101141342	3300009499	Deep Subsurface	MTEQNQQDLELKKELEKINWKLDYGSVKIQIRNGKLSLLTIERTVKLD*
Ga0114930_103770602	3300009499	Deep Subsurface	MTDSKDLELKKELEKIDWNLEYGSVKIQIRQGKPTLMIIERTVKL
Ga0114920_100102416	3300009528	Deep Subsurface	MTDKDIELKEELEKINWTKFLEYGIIKVQVRAGKPTLITIERTVKLD*
Ga0114920_103907452	3300009528	Deep Subsurface	MTDKDIELKQELEKINWTKFLEYGIIRVQVRAGKPTLITIERTVKLD*
Ga0114919_100476284	3300009529	Deep Subsurface	MSDQQEKQDRELKEALERVDWKLDYGSVKIQIRAGKPTLITTERTVKLD*
Ga0114919_101379325	3300009529	Deep Subsurface	MTDKDIELKKELEKIDWLKFLEYGIIRVQVRAGKPTLITIERTIKLD*
Ga0114919_102411382	3300009529	Deep Subsurface	MVNKEHNQQDAELKKELDEINWYIDYGSVKIQIRQGKPTLATIERTVKLD*
Ga0114919_102951832	3300009529	Deep Subsurface	MIEQKDLELKRELEKIDWKLDYGSVKIQIRGGKPTLITIERTVKLD*
Ga0114919_102952682	3300009529	Deep Subsurface	MSDKLEIENQQELELKKSLEKIDWPVDYGNVKIQIRNGQITLLTIEKTIKFD*
Ga0114919_104314012	3300009529	Deep Subsurface	MTDIEELKKQLEKIDWELDYGSVKIQIRQGKPTLITIERTVKLD*
Ga0114919_104562961	3300009529	Deep Subsurface	KKELERVNWPIDYGSVKIQLRAGKPTLVTIERTVKLD*
Ga0114919_105040052	3300009529	Deep Subsurface	MTDQDLELKKELEKIDWHLEYGSVKIQIRNGKVTLLTIERTVKLD*
Ga0114919_105405082	3300009529	Deep Subsurface	MTDSLEELKEELEKVNWIKFLEYGIIRVQVRAGKPTLITIERTVKLD*
Ga0114919_106569101	3300009529	Deep Subsurface	ELKKELEKTDWTIDYGSVTIQITQGKPTLITIERKVKLD*
Ga0114919_107250392	3300009529	Deep Subsurface	MTADDKLREQLDKIDWPIDYGSVKVQLRNGKPTLITIERTVKLD*
Ga0114919_110078432	3300009529	Deep Subsurface	MNEIQNWQDTELKKQLEKIDWKLDYGSVKIQIREGKPTLITIERTVKLD*
Ga0114919_110337272	3300009529	Deep Subsurface	MTTDRVRILDQNDTNLKKELGKVTWPLEYGIVKVQVRNGKPCLVTIERTVKLD*
Ga0114919_111005531	3300009529	Deep Subsurface	MTNQNEQDLELKKELEKIDWKLEYGSVKVQIRNGKPSLITIERTVKLD*
Ga0114919_111215543	3300009529	Deep Subsurface	MIDNPQDLELKKELEKIDWKLDYGSVKIQIRQGKPTLITIERTVKLD*
Ga0114922_114413313	3300011118	Deep Subsurface	MTKPFEDLELKRQLERIDWPIEHGSVKVQIRNGKPTLVTIERTVK
(restricted) Ga0172363_105712002	3300013130	Sediment	MTDKFEIINRQDTSLKNELERIDWPLDYGTVKVQIRAGKPTLVTIERTIKLD*
Ga0180008_10013314	3300014613	Groundwater	MDRLAIQNEQDEALKKELEKIDWTIDYGSVIVKIRNGKPTLVTIERTVKID*
Ga0180008_10091742	3300014613	Groundwater	MSEAQNQQDTNLKEQLDKIDWPIKYGNIRIQLREGKPTLVTIEKTIKLD*
Ga0180008_10127103	3300014613	Groundwater	MTDEELKELLEKIVWPIEYGSVKVTLRNGKPTLVTIERTVKLD*
Ga0180008_10188552	3300014613	Groundwater	MVEKLEIQNPQDIELKKQLEKVDWNLDYGSVKVQIRYGKPTLITIERTVKLD*
Ga0180008_10210915	3300014613	Groundwater	MTDKLEELKKELEKIDWTIDYGSVKVQIRQGKPTLITIERTVRLD*
Ga0180008_10298114	3300014613	Groundwater	MTDQQDFELKKELEKMNWPIEYGTVKVQIRASKPTLVTIERTVKLD*
Ga0180008_10318461	3300014613	Groundwater	MTDKPEDQRLKRELEKVNWNLDYGSVKIQIRQGKPTLVTVERTIKLE*
Ga0180008_10586631	3300014613	Groundwater	IDLKKELEKVDFNLDYGSVKIQIRGGKPTLVTIERTVKLD*
Ga0180008_10637732	3300014613	Groundwater	MTDNPEQKDLELKKELEKIGWPIEHGSVKIQIRNGKPTLVTIERTVKLD*
Ga0180008_10697812	3300014613	Groundwater	MTDKLEIQNQQDIEFKVQLDKINWTIDYGSVKIQIRNGKPTLVTIERTVKLD*
Ga0180008_10862332	3300014613	Groundwater	MTDQNQQDIDLKKELEKVDFNLDYGSVKIQIRNSKPTLVTIERTVKLD*
Ga0180008_10868181	3300014613	Groundwater	MVCESVNQHQQDNNLKQQLDKIDWPIYYGSIKVQLRDGKITLVTVERTVKFD*
Ga0180008_11370601	3300014613	Groundwater	MEVADAKLKEQLEKVAWPVDYGIIKVQIRAGKPTLVTIERTVKLD*
Ga0180008_11382662	3300014613	Groundwater	MTDSKDLELKKALGKVDWNLDYGSVKIQIRQGKPTLITIERTVKID*
Ga0180008_11645582	3300014613	Groundwater	VFGDTGMTDKLVIQNQQDIDLKKELEKVDFNLDYGSVKIQIRNSKPTLVTIERTVKLD*
Ga0180008_12392102	3300014613	Groundwater	MINNQQDLELKKELEKIDWPIEFGSVKIQIRFGKPTLVTIERTVKFD*
Ga0180008_12975931	3300014613	Groundwater	MTDSKDQELKKELEKIDWHLEYGSVKIQIRNGKPTLITIERTVKID*
Ga0180008_13249532	3300014613	Groundwater	MTDEEQNRQDVKLKEELERIDWRLDYGSVKVQIRQGKPTTITIERTIKLD*
Ga0180008_13715252	3300014613	Groundwater	MPNPNSPGDQKLKNGLEQIDWPLDYGSVKVQIREGKPTLITIERTVKID*
Ga0180008_13793041	3300014613	Groundwater	MTAEQETSLKTELRRIAWPVEYGSVKIQIRGGKPVIIAVERTIKLD*
Ga0180008_14026051	3300014613	Groundwater	MAESQDLELKKELEKVDFNLDYGSVKIQIRNSKPTLVTIERTVKLD*
Ga0180008_14036371	3300014613	Groundwater	MTEEQNQQDLELKKELEKIDWNLDYGSVKVQIRQGKPSLITIERTVRMD
Ga0180008_14135942	3300014613	Groundwater	MTDNQDKYLLKELEKIEWPVEYGSVKVQIRAGKPTLITIERTVKLD*
Ga0180007_100263666	3300014656	Groundwater	MTDKQSELAIKEELELKRTIMGIDWLIFHGSVKVQIRFGKPSLITIERTVKLD*
Ga0180007_100271714	3300014656	Groundwater	MTDQQDFELKKELEKVNWPIEYGTVKVQIRASKPTLVTIERTVKLD*
Ga0180007_100455624	3300014656	Groundwater	MTAEDEALQRALEKVCWPIEYGSVKIQIRRGKPALITIERTVKLD*
Ga0180007_102121823	3300014656	Groundwater	MTDKLEILNQHDNYLKQQLEKVDFNLDYGSVKIQIRNGRPTLVTTERTVKLD*
Ga0180007_102152284	3300014656	Groundwater	MTDSKDLELKKELEKIDWHLDYGSVKVQIRNGKPTLVTIERTVKLD*
Ga0180007_102386472	3300014656	Groundwater	MTDQNQQDIDLKKELEKVDFNLDYGSVKIQIRGGKPTLVTIERTVKLD*
Ga0180007_103014312	3300014656	Groundwater	MTDKELLKELEKIEWPIEYGSVKVQIRAGKPTLITIERTVKLD*
Ga0180007_103516292	3300014656	Groundwater	MTDKLEILNQHDKYLKQQLEKVNFNLDYGSVKIQIRNGRPTLVTTERTIKLD*
Ga0180007_103599583	3300014656	Groundwater	MTDKDQELKKELEKIDWPIEYGSVKIQIRNGKPSLITIERTVKLD*
Ga0180007_103976242	3300014656	Groundwater	NYSSCEVEEMTEKKDLELKKELEKIDWPIEYGTVKVTIRAGKPTLVTIERTVKLD*
Ga0180007_105290142	3300014656	Groundwater	MPDEKDLELKKSLEKINWNLDYGSVKLQIRAGCVTLITIERTVKLD*
Ga0180007_106539542	3300014656	Groundwater	MPERLEIQNQQDLELKKELEKIDWRLDYGSVKITIRNGKPSLITIERTVKLD*
Ga0180007_106780071	3300014656	Groundwater	NQQDIDLKKELEKVDFNLDYGSVKIQIRNSKPTLVTIERTVKLD*
Ga0180007_108586831	3300014656	Groundwater	MCYRTGDVEEMTDIELKKEIDKIDWPIDYGSVKITIRNGKPTLVTIERTVKLD*
Ga0180732_100080526	3300020171	Groundwater	MTDKFEIENQNDIELKKSLDKIDWPCYYGSVKIQIRAGKPSLITIERTVKLD
Ga0180732_10144539	3300020171	Groundwater	VAVGLIKMTDQELKKQLEKIEWPIEYGSVKIQIRNSKPSLVTIERTVKLD
Ga0180732_10406582	3300020171	Groundwater	MSDKLEGQNQQDLELKKQLERIDWNLDYGSVKILIRQGKPSLVIIERTVRLD
Ga0180732_10547343	3300020171	Groundwater	VEVADAKLKEQLEKVAWPVEYGTIKVQVRAGKPTLVTIERTVKLD
Ga0180732_10621573	3300020171	Groundwater	MTDRLEIVNQDTELKKQLEKVDWNLDYGSVKIQIRQGKPTLVTIERTVKLD
Ga0180732_11099002	3300020171	Groundwater	MTDKLELENRQDTELKKALEKIDWNLDYGSVKIQIRGGKPTLVTMERTIKLD
Ga0180732_11212683	3300020171	Groundwater	MTDRLVIQSQQDIELKRELDKVDWTIDYGSVRIQIRNGKVTTVAVERTIKCD
Ga0180732_11279082	3300020171	Groundwater	MSIEIQTEQDLVLKKKLQDIDWTIDWGSVKIQIRDGKVSMVTIERTIRLD
Ga0180732_11702912	3300020171	Groundwater	MTDRLEIINPADTELKKQLEAIRWPVEYGVVSLQIRNGKPTMLKIERTVKLD
Ga0180732_11857342	3300020171	Groundwater	YSELKEQLKKIDWMLDYGSIKVQLRGGKPTLIIVEQTLKLD
Ga0210003_100034528	3300024262	Deep Subsurface	MLSEELRRELERIDWRLDYGSVKIQIRDGKATLITIERTVRLDVKA
Ga0209979_11351932	3300024353	Deep Subsurface	MTEQNQQDLELKKELEKINWKLDYGSVKIQIRNGKLSLLTIERTVKLD
Ga0209986_100579356	3300024433	Deep Subsurface	MTDKDIELKKELEKIDWLKFLEYGIIRVQVRAGKPTLITIERTIKLD
(restricted) Ga0255046_101738332	3300024519	Seawater	MGVINRAMTEQEIKDSKLKEQLETIDWPLDYGSIKIQLRNGKPSLITIERTVKLD
Ga0210018_10889031	3300024995	Groundwater	ELKQSLDKIDWPIYYGNVRIQIREGKVTLVTIERTIRLD
Ga0207997_10567062	3300025736	Saline Lake	MTDIELKKELEKINWPIEYGTIKVQIRNGKPTLITIERTVKLD
(restricted) Ga0255055_100327902	3300027881	Seawater	MNNPKDTELKEQLEKIAWPIEYGNVKIQIRQGKPTLVTIERTVKLD
(restricted) Ga0255055_101439021	3300027881	Seawater	MNNPNDTELKEQLDKITWPIEYGNVKIQIRQGKPTLVTIERTVKLD
Ga0209777_105166942	3300027896	Freshwater Lake Sediment	EDANLKKSLEKVDWPIEYGNVKVQLRAGKPTLVTIERTVKLD
Ga0209427_101186454	3300027901	Marine Sediment	MKPIDDTTKLKEQLEKIDWPISYGNIRIQLRESKPTLVTIERTIKMD
Ga0265297_103803423	3300029288	Landfill Leachate	MDRLEIQGQQETNLKKQLEAVDWNLDYGSVKVQIRAGKPTLVTVEKTIKLD
Ga0307928_102228172	3300031227	Saline Water	MTDIELKKELEKINWPIDYGTVKVQIRNGKPTLITIERTVKLD
Ga0307928_102929101	3300031227	Saline Water	MNQQDLELKKELDKIDWHLDYGSVKIQIRDGKPTLITIERTVKLD
Ga0307928_105360771	3300031227	Saline Water	MCFSPSYIKEMNQQDIKLKNELGKIDWPIDYGSVKVQIRDGKPSLVTIERTIKLD
Ga0307431_10083657	3300031278	Salt Marsh	MLEKQDIELKKELEKIDWHLEYGSVKIQIRNGKPTLVTIERTVKID
Ga0307427_10717851	3300031351	Salt Marsh	MPLPTPDEVEKMTDVDLELKKELEKIDWHLDYGSVKIQIRNGKPTLVTIERTVKLD
Ga0307380_1002834810	3300031539	Soil	MTDEELRKQLEGVDWPVKYGTVKVQIRNGKPTLVIIERTIKLD
Ga0307380_100680903	3300031539	Soil	MTDKDAELKKQLDKIDWNLDYGSVKVQIRNSKPTLVTIERTIKLD
Ga0307380_102154972	3300031539	Soil	MTERIEIQNQQDIELKKELEKINWNLNYGSVKVQIRNGKPSLVTVERTVKLD
Ga0315547_10848362	3300031553	Salt Marsh Sediment	MKDEPIDTKLKEQLDKIEWPIAYGNVRIQLRKGKPTLVTIERTIKMD
Ga0307379_106647682	3300031565	Soil	MTDPKDIELKKELEKIDWNLEYGSVKIQIRNGKPTLITIERMVKLD
Ga0307378_101409681	3300031566	Soil	MTDEELRKQLEGVDWPVKYGTVKVQIRNGKPTLVIIERTI
Ga0307378_102422443	3300031566	Soil	VRETQMTDEELRKQLEGVDWPVKYGTVKVQIRNGKPTLVIIERTIKLD
Ga0307376_104820492	3300031578	Soil	MADKPIDIKLKEQLEKIEWPIAYGNIRIQLREGKPTLVTIERTIKMD
Ga0307376_109425732	3300031578	Soil	MTDKELKKELEKIDWPVEYGSVKVQIRAGKPTLITIERTVKLD
Ga0315541_10016403	3300031586	Salt Marsh Sediment	MTDEKDLELKKELEKINWNLDYGSVKIQIRQGKPTLVTIERTIKLD
Ga0307377_100869592	3300031673	Soil	MTDTKDIELKKELEKIDWNLEYGSVKIQIRNGKPTLITIERMVKLD
Ga0307377_103889972	3300031673	Soil	MNAEKHNQNQRDLELKRALEKVDWNLDYGSVKVQIRQGKPTLITIERTVKLD
Ga0307377_105661703	3300031673	Soil	MHVSTSEVEEMTDEDLKAQLEKIDWPIDYGSVKITIRNGKPTLVTIERTVKLD