Scaffold Ga0111033_1054793

Overview

Basic Information

• Taxon OID: 3300008516
• Scaffold ID: Ga0111033_1054793
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6015
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008882	Metagenome / Metatranscriptome	326	N
F013295	Metagenome	272	N
F032084	Metagenome	181	N
F044193	Metagenome	155	Y
F095342	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111033_10547931	F032084	N/A	IAKNTEIILIKSLVRRNQTRSKKMRLILSEKDKHIIVTVLGDYATEIDRQRTKTKEDLDTYKRIENIISQVAFGIDKEEKEE*
Ga0111033_105479313	F044193	AGGAG	MIIEEYQENYKNYFMFITVHHSLIEASIHNYWDDDFEYTNRFIDYSPKEVSKILRHYIDNHEEQAIA*
Ga0111033_10547936	F013295	GGAG	MKINDLTPKQFARREIIKYLRDLFDNPAKYIKDFDSYTHRQQEEILRFISLDEHRIDKLLNLPMGES*
Ga0111033_10547938	F095342	AGGGGG	MSKTEMIAEIKSLCNANENNPYCSIYWLADMIKEIVNSPDLKENEDE*
Ga0111033_10547939	F008882	GAGG	MSIKRYNFNKPKINRQELELLNWFLAQTDDNPLINPKALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEQR*