Scaffold Ga0110940_1041432

Overview

Basic Information

• Taxon OID: 3300008487
• Scaffold ID: Ga0110940_1041432
• Source Dataset Name: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2709
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Hospital Sewers

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N
F080163	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0110940_10414321	F032312	N/A	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0110940_10414322	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHRVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD*
Ga0110940_10414323	F080163	N/A	MKTIKFLQESFETKERFQQEISFKYSYNRNTVESVDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQNFYNYSHRDLSFSTKLESQVLDSENELLQEKLNLIREEICKLIGVDPNLEKQGHEDNYVFNLNIESDNQMGFFFASN*