3300008487: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 4

Overview

Basic Information

• IMG/M Taxon OID: 3300008487
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118183 | Gp0131411 | Ga0110940
• Sample Name: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 4
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 187818199
• Sequencing Scaffolds: 14
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1
Not Available	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → unclassified Acidovorax → Acidovorax sp. Leaf73	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Microbial Communities From The Hospital Sewers
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Hospital Sewers

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001981	Metagenome / Metatranscriptome	608	N
F009686	Metagenome / Metatranscriptome	314	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F060985	Metagenome / Metatranscriptome	132	N
F062845	Metagenome	130	N
F074964	Metagenome	119	N
F078822	Metagenome	116	N
F080163	Metagenome	115	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F083928	Metagenome	112	Y
F085718	Metagenome	111	N
F088920	Metagenome	109	Y
F094005	Metagenome / Metatranscriptome	106	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110940_1005727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5268
Ga0110940_1017377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1899
Ga0110940_1031766	Not Available	1287
Ga0110940_1035845	All Organisms → cellular organisms → Bacteria	2170
Ga0110940_1041432	All Organisms → cellular organisms → Bacteria	2709
Ga0110940_1071612	Not Available	782
Ga0110940_1079943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	724
Ga0110940_1084345	Not Available	535
Ga0110940_1125921	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	782
Ga0110940_1132889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	927
Ga0110940_1202494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → unclassified Acidovorax → Acidovorax sp. Leaf73	633
Ga0110940_1215989	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	534
Ga0110940_1259803	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	867
Ga0110940_1280237	Not Available	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110940_1005727	Ga0110940_10057274	F047125	MDVVLLLMVLGVMLSGFWAADALDHIRKEILRQEGKRRGWWS*
Ga0110940_1017377	Ga0110940_10173771	F094005	LIFKNKIVYLYNKNKYIIYMKKEIVKLKEGNSVIYQDKTLMEKVNVVSIDKKKGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKL
Ga0110940_1031766	Ga0110940_10317662	F078822	LSSTFFDIFLSFPNAFLKAFRPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0110940_1035845	Ga0110940_10358453	F009686	MNKEIQMSERQMFEKSFERPSNYFKLSSQQQWEIDSKLGILDWNGEDLTEEDIKRFKAHYER*
Ga0110940_1041432	Ga0110940_10414321	F032312	MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0110940_1041432	Ga0110940_10414322	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHRVIKPWFQPERFGITNIWFLLEHGTYFCSNEYLLSNGKLHKTPIDKIDRENRIFGYWFPPYKKYIPHRLRVLRLALKDLERIKEEYGKD*
Ga0110940_1041432	Ga0110940_10414323	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRNTVESVDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQNFYNYSHRDLSFSTKLESQVLDSENELLQEKLNLIREEICKLIGVDPNLEKQGHEDNYVFNLNIESDNQMGFFFASN*
Ga0110940_1071612	Ga0110940_10716122	F088920	ILHLILHFSQKVAIFAPKRAILLIFVPTLFFAGLSVFSPQTSPKISGQTSLYQPWLSPYCLFKD*
Ga0110940_1079943	Ga0110940_10799431	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIETKTADWCAENVIYGGEYKPFGFSTGETLETKKSAKWLVKETDEYKATYVAVRIKSYSIRTIAKCVSEYLTHESNQQ*
Ga0110940_1084345	Ga0110940_10843451	F044555	QKGNQILSCKVYKEPNYILSMSNEEILELISGLDYMGNIPMVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISGFQAQYNIQEINPYLQDILQNPEDLVSLAQHHKR*
Ga0110940_1125921	Ga0110940_11259213	F080673	DEAYYILTTENEMTEVLMSKREDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRGQDVNAILNNINREKVLKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFVYFMARML*
Ga0110940_1132889	Ga0110940_11328892	F062845	MKKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDGLLNAVPSRSCA*
Ga0110940_1202494	Ga0110940_12024942	F083928	MKCIQFLNSLRPAIPMSAERPCEAMSTGELKRHVLQVAVLINGERVTPEEPIDFPVFRLVFFPKSDKRRTTIV*
Ga0110940_1215989	Ga0110940_12159892	F085718	LRNGKEPRVLCDNGKGDRPIVVMVEDDNANDYIVLRYNETGRRNINGQSSLDLMLSVKEREPELWVVVISYIDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGRFDELREKIRVKRDRIYNMEIISLSDDKATV*
Ga0110940_1259803	Ga0110940_12598031	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMVECKKEIDYLMKGTSKSFQISFAVRSDEMREMIENMVGDNIREGYDVFSKEAEMVNETDRDKIEEFNKSLAHE*
Ga0110940_1280237	Ga0110940_12802371	F001981	FPVTIQPMNLPTLITIPKADIRKAEIAQIARHLIDRINEGEVNPVEAHIKLKAIAKALEVTIKATEEVVTVEAAKHGKTFQAFGAEITLKEGSIGPNCDEDATYAALKAQLKAREELLKIAFRQAGKTVIYDESTGEQIPVCSAKGTKPSIAVSFK*
Ga0110940_1290069	Ga0110940_12900691	F101356	SNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*