Scaffold Ga0115371_10289923

Overview

Basic Information

• Taxon OID: 3300008470
• Scaffold ID: Ga0115371_10289923
• Source Dataset Name: Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1338
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Sediment Core Microbial Communities From Adelie Basin, Antarctica

Source Dataset Sampling Location

• Location Name: Adelie Basin, Antarctica
• Coordinates
  • Lat. (^o): -66.314
  • Long. (^o): 140.425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F085894	Metagenome / Metatranscriptome	111	Y
F090410	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115371_102899231	F090410	N/A	MSKTNKSWVGQHAAFSEALKYMNARQKGEEKSIYTPWPKFN
Ga0115371_102899232	F085894	N/A	MTPAKTTEVLQKLNLVLEDIQLLRDGTWVPDKDSCEDTIDNITDVIYILENE*
Ga0115371_102899233	F002047	N/A	MKQGVSSTASSKLDKDILVSNGLLTFNENKYKLTPSAKAFCAKLDNYFIKAKKKTDIQLMGKDFAEQINIYRETFPNTRLPSGKPARVNVKMLSESFRWFFETYDYEWPDVIKATKMYVNEYRDADYMYMQTSQYFICKQDKHKVKSSTLADYCDMIRDGIDTEEKTFKEKVV*