Scaffold Ga0115371_10102926

Overview

Basic Information

• Taxon OID: 3300008470
• Scaffold ID: Ga0115371_10102926
• Source Dataset Name: Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20016
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (23.91%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Sediment Core Microbial Communities From Adelie Basin, Antarctica

Source Dataset Sampling Location

• Location Name: Adelie Basin, Antarctica
• Coordinates
  • Lat. (^o): -66.314
  • Long. (^o): 140.425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F027524	Metagenome	194	N
F028650	Metagenome	191	N
F034931	Metagenome	173	N
F036312	Metagenome	170	Y
F076111	Metagenome	118	N
F079336	Metagenome	116	Y
F099320	Metagenome	103	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y
F105502	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115371_1010292616	F036312	N/A	MKHKLTHSLCEMQKVQKDLWEVFTTDYWNNGTYTTKDISHHATEREAKEQKEINKHKNLNK*
Ga0115371_1010292618	F079336	N/A	MEAILRTELETADKRIIVLESTIDTYKRILDAMDERIELMEKSHKFELENFYTKNK*
Ga0115371_101029262	F105502	N/A	MLSSYQRLKLKKELAVKFAEETKEDIEFVILRPHSRRAKNIRREVKDRNNG*
Ga0115371_1010292627	F076111	N/A	MTLEQLTTKLELNILIEKVLQKSGAYRTPLSKEEALKGVQLSQTTKDTLHTLKSALEWITLSEDLVNDYRKKVQELENDKYKLSVENSKLRTRANYTEQKNKNILEHIELKENK*
Ga0115371_1010292634	F027524	N/A	VNEDFIKEKQPVIEKACLTICKHSELSKDLAQEVSIYFLTNPLPDNLSKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLLESSDIDYLKAEDIPYINDNIYKEYKEHIGQLDNMEQIWVEEIVKRNMSIALFSQHSGIHRTTATERMESIYNKLRKNSK*
Ga0115371_1010292635	F103288	N/A	MSIIIISILAILGWANLFKQTFTTKEGFKYKYYFARTLISSLDIKPFNCAYCLSFWISLVFTIAFIDLSYMVIFLYFAKQD*
Ga0115371_1010292637	F099320	GAGG	MEENVYNYYLEVQEDGNLYLVTEYANGYITEWAANATIECEGEVYFINLYED*
Ga0115371_1010292639	F100003	N/A	MKIKRKHYKALQYASLIQRWKYLPSNFIFEVVTNCEIDEQKLNRNRIEQNDKRI*
Ga0115371_1010292640	F018478	GAG	MIKEFEEMDWSKEYTYKEQKIYISYETKKYILCSFYENGKGTFKLDKTEFHG*
Ga0115371_1010292645	F028650	N/A	MRIPKSLKEVLVKDYIQINKIRSAEYENPFTRTIDLLCIFNDRADVLKQKPSELAVDLSHLLEEPSRILKQYFTINGKRYGIVNHINDLEAGQYMSFTTYLKGFEDNPNVHIDQMPDILASVIFPVDENNKVMAFEPSYFRKLAEDIRNTMSIEDAFPICVFFCLLCKNLTTTTQSYLKTKLQNMTEQSRSAILEVAKDLEKDGVGLPPSITSVMETLQKDHTTKK*
Ga0115371_101029265	F034931	N/A	MTNSGELIAQNGVIVVNDAVVNVVNADSYYVAEDTVIARIEVNGDTATDVKANYISTPATAVKGGILITPQSGDYFSAITLTSGSVVAILK*