Scaffold Ga0115358_10025769

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115358_10025769

Scaffold Ga0115358_10025769

Overview

Basic Information
Taxon OID	3300008468 Open in IMG/M
Scaffold ID	Ga0115358_10025769 Open in IMG/M
Source Dataset Name	Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	934
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	27.4	Long. (^o)	-93.2	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034978	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115358_100257692	F034978	N/A	MXXXINATRDQIEEFKSSVLWSDIVKELKNWSIGFNSEMMSIVDNSADDNPSTASVLLHMGDLNGRQKAVDYLLSIPDVFLSILETKETKEGETDGE*

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