NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115335_102771

Scaffold Ga0115335_102771


Overview

Basic Information
Taxon OID3300008463 Open in IMG/M
Scaffold IDGa0115335_102771 Open in IMG/M
Source Dataset NameDeep sea sediment microbial communities from the Gulf of Mexico ? control with no oil added
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Texas, Austin
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2924
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Unclassified → Unclassified → Unclassified → Sediment → Deep Sea Sediment Microbial Communities From The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.0Long. (o)-88.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048324Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0115335_1027712F048324N/AVAAAFIAACDPQPTSVEDIDFVKLEGMQSECASRAASAAMESFSDDTAWSDLLSVEGAGGAVAAITDATQLELQSCITDIYLMGIEDGRMLEREIY*

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