Scaffold Ga0114880_1001897

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1001897
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12096
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F012113	Metagenome / Metatranscriptome	283	Y
F019102	Metagenome	231	Y
F025739	Metagenome / Metatranscriptome	200	Y
F041645	Metagenome	159	Y
F045612	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100189710	F006138	GAGG	MAAVTIGTQGLSFGLVAEAGIGLVQSFSEARNVEKNEVKNNLGDIVAIGYFNATTSYSLSVAITGSFNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT*
Ga0114880_100189712	F019102	N/A	MSISLDEELNSAFISPDKEYMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYMHIQIAKGRKEAIKLAWNRDLFREKIMDFIEGKTEADRDAATQIVSNILDEAQKGKVEAIPAPHQAELGNA*
Ga0114880_100189716	F041645	GGTGG	MASVIIGSAIGATSTSKALQRQNFNKEPNGLETIIEAYAIQTANRDAVVPEKNTLHSAFSSSTKKYSRMVVESVATEEQDGGITQMLVTYVGLTILTGLPPAIVRIIPAAGEGVYGPPVVIEAEYVTDVSETQFMAGQRAQNNATQFTFGFNSVIKMPPFINGTALPQDPRPAFFSSPSGGVGFIENYSGYCVLSKSCERRGLFLVARDTFHEVQQVATVGAQ*
Ga0114880_10018972	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYQGVFDLTSYVKAGHRQGDVIDLEVWPNQYEAYRKSRRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPESYNLVAPFGLSQGHYRNPLELIVRARQTMGKDNFFVLCPADIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKDEWETDNIFSFEGMTTMD*
Ga0114880_100189720	F012113	N/A	MNTLLSFIQSQDIFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*
Ga0114880_100189721	F025739	N/A	LLGLFSGGLKIEPKPAGKGTMMKLLTIESSVIRRSILGFIVGSLICGCATTRPYDIGEVPNQDSITDYIMRWDKLDRTKATPEEYRQLFGQSLKT
Ga0114880_10018973	F005584	N/A	MIADMFQTVTGLGSSAVSASVTDLTTASELEIGGEVFRVTQSLVVLASAISAPTIGSLCSVSGVERMIGGFSQSTDGLSFTIELAEITT*
Ga0114880_10018975	F009142	N/A	MNQSVQINIEDAIENLLAYVPNLNTYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVSVSVDYSDTAAKISQEDFDNTYCQIFEAFYEETPPLFTKIQNNILDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTLSELDDGLRYLNFYQKQNSMYVAVI*
Ga0114880_10018978	F045612	GAG	MMHQYTYEDFMSSLKWLEAEGYIEKFYDTNGDLCVRVCEGAEDCEV*