Scaffold Ga0114876_1019326

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1019326
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3579
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027512	Metagenome	194	Y
F029657	Metagenome	187	N
F029746	Metagenome	187	N
F091345	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_10193261	F029746	N/A	FWGEPDDIEPLPEWMDPKTYSNPKPKRHGPSLMESIQEAMKKPPVPIIIQEPKND*
Ga0114876_10193263	F091345	AGGA	MKTIQQQETEAILSMVELIKTLEQQLSNAKDRIKELEDNQKQSDFAELKSHYQ*
Ga0114876_10193266	F027512	N/A	MNEQIEEFLEMYGDRLPNPEHCPKEFEYYVKLYKYIKGLE*
Ga0114876_10193269	F029657	AGCAG	MKTTCKPCITIRTFFFLLRKNYQQFRKELKDYSYINQISCEMPKYKAPKTIDEGMAELKRVRETAKKNYSKEKEEELLKSVVQ*