Scaffold Ga0114876

Basic Information
Taxon OID	3300008448 Open in IMG/M
Scaffold ID	Ga0114876_1009740 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5577
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (95.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5577

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (95.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F013279	Metagenome / Metatranscriptome	272	Y
F037113	Metagenome / Metatranscriptome	168	Y
F075748	Metagenome	118	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100974010	F003212	GGA	MKDKWLITLEIDTYDGPDPRYWDWSKLLTGDDVKVIESQFKGRVLPTSEGESNE*
Ga0114876_100974011	F037113	GGAG	MSKWTVWVGGSEVNWQHYTHKIDAERIAEFWREVKGYDDVIVEEVA*
Ga0114876_100974012	F000821	GAGG	MNREYLEAKFDLCINQAEKNIQEEEIALAIANLRRANSALSQLFGFEEEVESDN*
Ga0114876_100974014	F001477	GGAGG	VSNVYTIHPPKSELILFYEVVTPEGENEWGGANAEQCMQWLTLAPNGSRVLVSAWDSDEEDAHLVGQTIDITEIIQRAREIGR*
Ga0114876_100974015	F095162	GGAGG	MTDDKRMASAAKAAVYYRNYRRARDRALIKLSHLHPEDYKELLEKEKMSDEQEGKTWIDLNGTVISPRIVTRAKDRGITFPKANASTNTDEGNNGGEA*
Ga0114876_100974017	F013279	AGGA	MQYDYRCPDCNTVLTIERSIHDDPREPSCFDCHIPMIRKWDSPAITFKGKGFYSTGG*
Ga0114876_10097409	F075748	GGAGG	MNKQEILAVIDSTDAFNSFIEGLDSLSGQALGLVIDVAGVDGEEWTDEECLETIKEIVDMTNAYRNTHDWGS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114876_1009740

Overview

Ecosystem & Geography

Associated Families

Sequences