 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008448 Open in IMG/M |
| Scaffold ID | Ga0114876_1009035 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5850 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (84.21%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Western Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018135 | Metagenome | 236 | Y |
| F040536 | Metagenome | 161 | N |
| F041090 | Metagenome | 160 | Y |
| F055552 | Metagenome | 138 | Y |
| F066578 | Metagenome / Metatranscriptome | 126 | Y |
| F090097 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114876_10090351 | F066578 | N/A | GVYSFDLMDLPEPEWVNHWMPATTEFSRSQKITKLVGYLDINEAVKI* |
| Ga0114876_100903516 | F018135 | GAG | MIVERAHPSGAYVISDFKGEGAGEYLFTRTYFGYTLKQAKQLFKIALEREGE* |
| Ga0114876_10090355 | F041090 | GAGG | VKNNITSGSSENIVKLSDIQSERQRASSPYGPLRAGSITWQKTDRDRQLTELLNSLESVVADLNSKSYTVLDTLIIAIQEARVALSDTTTERAGTDADGS* |
| Ga0114876_10090356 | F090097 | GGAGG | MTEIAKRVEGAKRMAVRQRNYRRARDRALTRLAQAYPETYKELLELEKVNDETTGAKWISIDGSSSLVVVTRTGNREEGIVIESADYFPEGEGDSE* |
| Ga0114876_10090358 | F040536 | GAGG | MDKMGKLISFHPVKSGLKLFYEVIEPDGETRWGGERVFDAVSWLHLAPRGSRLLVSGWESDDLDALPVGQPLDVTELYQTLKGND* |
| Ga0114876_10090359 | F055552 | GGAGG | MNKEYWQAKAEVCRKVGIEQLIEGDIPNGTRNLKRMVRAMEEINLIKAGEDKSAEDMWASLITNGLLLAGEDKTNG* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |