Scaffold Ga0114876_1007808

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1007808
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6404
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003863	Metagenome	464	Y
F011484	Metagenome	290	Y
F017972	Metagenome	237	Y
F086805	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100780812	F000821	GGAGG	MNEEYLRAKFNLCLDQAEKNIKEEDIALAIKNLERANSAMARLFGLEEEENE*
Ga0114876_100780814	F003863	GGAGG	MESKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWIISSNSRLTVGIHTRANNTPAITDPGSAGENEGNDGGEA*
Ga0114876_100780815	F017972	GGAGG	VRTRHLQLVSSEHSVTTHNNESVRSHFGPVSPGSTTLLAQETLRVNQLAQLSELLSSLESVVEHLNYRSFTLYDTLNTAIEAVSVALNDTQTESVGTD*
Ga0114876_10078085	F086805	GAG	MRELSKRGNLVAGIAIGLIIAGLIWVSGNVWYTGTGYCRGSLIECDKEFTR*
Ga0114876_10078089	F011484	GGAG	MRELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQIAQVRRLLNLPQLMRERAS*