Scaffold Ga0114876_1003877

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1003877
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9935
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F024318	Metagenome	206	Y
F030017	Metagenome	186	Y
F104771	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100387712	F024318	N/A	MRKYTYLGKEIQRPADLAPRGVKSTYQTEKLPFNETFERLWKLKR*
Ga0114876_100387713	F030017	N/A	METQEIIDEIKRLYIEGFTRKKIAAKLGLDAEKVGYLLYTKLKLHEIYPRKLMDENIFQILSNHQISRVLTLATYGYNCKEIAEDQKLEFRKVKKLLDVAQSKNMIEKKV*
Ga0114876_100387720	F008073	N/A	MEFVCGLKQFKEYKKEEASELLGCLSKLFGSYGWMTEARVDYILHAGMRGQYGDFYHVNEKTVSVWINQYYAHHQSQIVQEVQALNNKEKEPSNEEIAYWIEVGKQIFRDNYQYAKDTGFCRDIAEWGMNWFNKFQEKGILKPWEFNVEEMENDVRKELRLTVRYVDETSVGAKTKNKIWKLFILQAIRENKDLDKLI*
Ga0114876_100387724	F005529	N/A	MAKGYPISKPDYSLEIRYRLRDGQWSPWSNKGKGKFECIELVQRQIRTLAAAYQGREKEVRFEWNGKLCNFTGEPTGQTILLM*
Ga0114876_10038774	F001775	N/A	MDQRIQIAILAFLGGVILTFVVYPRHEQETVYKFETVTKTDTLFVDKFETVYVPKTKIKTEVVRDTILVDFKPQISLFETTFPFEYGSTKVSGEVIGEVLKMTATNDYKLPVVTNTITNTETKTIVQKPKGIYLGGGVNSLLQPSASVSYLDNKYLFSYQFQPLQKVHQIGVAKKLF*
Ga0114876_10038779	F104771	N/A	MGKLFKDSEMYLDEEVQFVYEGEAYCWQGHYEVKQHGEESDWDYCGDSEVEVEIETTKAILKFNEETNDWHEVKPTQSMIYEVCFQIERYHL*