Scaffold Ga0114876_1002628

Overview

Basic Information

• Taxon OID: 3300008448
• Scaffold ID: Ga0114876_1002628
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12500
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (28.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017800	Metagenome / Metatranscriptome	238	Y
F031848	Metagenome / Metatranscriptome	181	N
F083667	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114876_100262810	F083667	N/A	MRTKAQVALTALEQALKITGVQEPKRDDEFTAAEYADKAEMHIESARRVLNRHVKEGKLNFRKTPKGHFYSVA*
Ga0114876_100262822	F031848	AGCAG	MSGLFPDLPEELSPRLKWMLKKNIKTIRREDGKWVAFKSETRFNNSDENEVDAVVGLAKKLKLKLWSE*
Ga0114876_10026284	F017800	N/A	MKTTALGILTIVATLSNVGIQLLNGSAPDFVGAFAAVTAGFGLIKARDAGR*