NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114876_1000383

Scaffold Ga0114876_1000383


Overview

Basic Information
Taxon OID3300008448 Open in IMG/M
Scaffold IDGa0114876_1000383 Open in IMG/M
Source Dataset NameFreshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34961
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (22.22%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location NameWestern Lake Erie
CoordinatesLat. (o)41.7032Long. (o)-83.2575Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F014605Metagenome / Metatranscriptome261N
F039629Metagenome / Metatranscriptome163N
F085401Metagenome / Metatranscriptome111Y
F091646Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0114876_100038338F014605N/AMKVNLAVAVTDIEGNEIPNERGEQMLLSKLVGNALFTAEDKEDPIRVYELAKKIYYSEGEIEMTKSDAELIKEKVKAKGFTVLILAPLYEALTEK*
Ga0114876_100038339F091646N/AMNILQKDEIGVPSTLVAIFANVFQAIGVDFINVVFTMSISVLSIVYLVYKIKNEKAIFDKRKDEEGK*
Ga0114876_100038345F001775N/AVSSLIEIKELLYVIISLPMEDKERIKIASLSFMIGVVLAFIVFPKPKYEEVYKFTTKVKTDTIYSREIDTIYVAKNKIKTEVLRDTILIDFKPQISLFESTFPFEYGSTKVSGEVLGEVLKMTATSDYNIPVVTNTITNTETRTIVQKPKGIYLGGVVSSKMELGAKVAYLDNKYLFEYQYQPFQKVHQIGVSKKLF*
Ga0114876_100038353F039629N/AMIEALDEITEIPFEVFWAKFMDLYPGIYDQFTTEVYWVKMREANRILAFQYLCQFGSDYKEPWKHLQHFDLPF*
Ga0114876_10003838F085401AGGAGGMFYEMMSAQEYGVLKGYSEKSTRVHQIIRSGKFPAEWTHPPKKIGNQWVVFVDPNWIKDGR*
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