Scaffold Ga0115225_100089

Overview

Basic Information

• Taxon OID: 3300008415
• Scaffold ID: Ga0115225_100089
• Source Dataset Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765013792 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44539
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (89.83%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115225_10008933	F067847	AGGA	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVANFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELKNL*
Ga0115225_10008940	F018385	GGA	MMAEYENQWGPYKEHSIEKDRNPALDDPIIYGVNVKHFTVTVYSQDGRVNKYWNVRILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSNRKTISRLYHEEVK*
Ga0115225_10008943	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELNDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0115225_10008944	F043991	GAG	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0115225_10008947	F027205	AGGA	VASRLIVSADDILKAVKESEEFERKALGEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0115225_10008948	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDRWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115225_10008949	F074985	AGGAGG	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYAEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFKKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*