NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114873_100139

Scaffold Ga0114873_100139


Overview

Basic Information
Taxon OID3300008385 Open in IMG/M
Scaffold IDGa0114873_100139 Open in IMG/M
Source Dataset NameHuman stool microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79209
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (20.20%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089054Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0114873_10013949F089054N/AMLTKGKFLVSFEVPGPLPGTTEGFCEEMVIPYRTEELRPYLRYPNQEINNNHLHSEHIRLQIREMLQIPLRDITIIDIISLP*

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