Scaffold Ga0115359_10025669

Overview

Basic Information

• Taxon OID: 3300008340
• Scaffold ID: Ga0115359_10025669
• Source Dataset Name: Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 950
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 27.4
  • Long. (^o): -93.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086602	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115359_100256691	F086602	N/A	VEIVRELLHHRGQLKGLLRLFFDKGGYCGQIFRTLADCPNVHFYTPAVRYSTNVKQWEQLKDADFDLEPFVYDKHXDLPAKERPMYRLADTETTINVREGHKVVGTVTLRSVVLHDPQGEKPAERWPIVILTDDRKIDARVLLNEYGDHWGQEFAHRIGRHDLCLDILPPGYVLKTWRDDQGELHREVEYDQTAFFLSAWLRCLVFNLMTRFAQAMGGEYIKMWAGTLLRKFIRRPATLYLIGKELHVVFDPFPGQEELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPLHPLTEPEKRNRLFGDX*