Scaffold Ga0114154_100129

Overview

Basic Information

• Taxon OID: 3300008269
• Scaffold ID: Ga0114154_100129
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77945
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F092229	Metagenome	107	N
F099453	Metagenome	103	N
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114154_10012932	F081455	N/A	VIDLDDLSPIYYSIVLFKAKEKHIMETMKNLLEMENVECISNLISKCSDYINRKERNTNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSEFNPECNPNKRLRYELIRHQGREKDLVIRLSTVIDGKTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0114154_10012933	F080166	N/A	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNTIHKKINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTVIEEAINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAMTPLLGSNRQNMLR*
Ga0114154_10012936	F099453	AGGAGG	MNRFDVIELAQQTLTFVYNTFNGKINTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLGNVIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYIVEYLEYGNSKLVIKITQGA*
Ga0114154_10012954	F092229	AGGAG	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPIVRTKIYDDYEFAKDVAERRFGSTIEKLDLRTVLQKCITRPYNSILNNIYFRYFNSELIDSLFKLGQSSKVLDLAIKYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVRDIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLEEYREEGKFIYGTKEYKILKELRSSPLMVVLTQLTRKNDSGYILNSNLELVKG*
Ga0114154_10012977	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRNYINPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSIENPEIAIHKPVISVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY*