Scaffold Ga0114364

Basic Information
Taxon OID	3300008267 Open in IMG/M
Scaffold ID	Ga0114364_1039443 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3565
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3565

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	5.7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

5.7

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F010397	Metagenome / Metatranscriptome	304	Y
F031030	Metagenome / Metatranscriptome	183	N
F045085	Metagenome / Metatranscriptome	153	Y
F079812	Metagenome / Metatranscriptome	115	N
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10394431	F031030	N/A	MGMFDDITCKYPLPLPEDPKGYSNNKYQTKDFDNAMDLYEIREDGTLWLHCAEYEYTDGNPNAKSLIEKLPTRKETKVWWQQIFPITDTVRLYAYDSDTNDTYDYWIEYDVTFVDGKVTKAKLLEFTATDNSERKERHRKDVEYWKSRRIFESTLFYRLVGKYYNKLISFICRSIHKSATWITYKIWKVEKFLKI*
Ga0114364_103944310	F079812	GAG	MDGNNRKIGYVKDSGSVIYAHGPNGENVGYYQKSTDTTFDRRGKRYGFGDLTNALVFEAVRKI*
Ga0114364_103944311	F091907	N/A	MNKNKTGRKATAVNEITDRNFTIVDLININTNVKAPTLRMHVKRSVANGRYTVAGSQKTGKRGKPSIVYTYNTTTTTTAEQTASI*
Ga0114364_10394432	F001840	N/A	MKDQDSIFLICECYEHGLLVEKFKDENEVSLSLFERGLSGRILPWRERLRWCWQILRYGKPWSDFIILNTENQKQLKEFLNECK*
Ga0114364_10394433	F010397	AGGA	MNVNEFERTKPVVTMQKINDLIKLIEDERVKTEILYKDRVRSLDDISILLKDMKSSFKKGE*
Ga0114364_10394435	F045085	AGTAG	MSKIINLTVGLIFGSIFAISLILVLMIFFAVLIPFLFYFTVKEVLKYLTKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114364_1039443

Overview

Ecosystem & Geography

Associated Families

Sequences