Scaffold Ga0114364_1016952

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1016952
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5552
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F036603	Metagenome	169	N
F042894	Metagenome	157	N
F105180	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_101695213	F042894	N/A	MLASPAHVIRGLSYQIAYSRDRVLQGDWTEKYARERIVLCGAIAEENLQQLHGCKLVSIYANLTTGCRALLTWSYVDRNGETFGGSVHPTIDGR*
Ga0114364_10169522	F105180	N/A	MLSLILFVTGLLIGLVAGLLIYRKHLDKLKAAEAKGKSIVDALKGR*
Ga0114364_10169525	F001923	N/A	MSPPPAPVDNEATQAIVKDGLVASILGGLAMTARLLLSTEPVSPGWVFRRITAAAITAALVGYGIQDHIASPGLRMAAVGAAGYAAPEVMDYVLKYIKARGEAEVAKVTKKPNGKKKPAKRRK*
Ga0114364_10169526	F036603	GAG	MMWATVALLICSAVGAFSVAYISSYILESFQNTTAMVMLITDAGTKSDDANLERQLSTATLGLKACRDLGWALAVGCLGVGVAVFLRFRRQNAS*