Scaffold Ga0114364_1014667

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1014667
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8166
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F014261	Metagenome	264	Y
F042864	Metagenome	157	Y
F105180	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_101466710	F001923	N/A	MSASPIDPDSITPQVKDGVVAGILGGLAMVARLLLSTEPVSFGWVVRRVLAAAITAALVGYAIQDHIQSPGLRMGVVGAAGYAAPECLDYLMKYIKARGEKEVAAVVGKPKKPHAKSKAKGKRGR*
Ga0114364_101466711	F003583	AGAAG	MQKAKPRESGDANLLLAVCLLTAFAGVSAFASAYIAGYVLDQLQSTDALVMIVTDAGLKSDSKDLESNMSAATLALKSVRDLGWALAVGCLGVGVAVFVRSRRQKA*
Ga0114364_101466713	F014261	N/A	MKALITASFLIIFGWLAVVTFFGPELYRAINGPEPVKAKVIRRAR*
Ga0114364_101466714	F042864	N/A	MSTNIKPKATLVSDKAMVELLKRKVTSFRETASLKDKDGYVRGIGSYALYGVDHTLGQIVVLASEPTAGDFNQYVTAKAKAEVCARYDQVVEYRDAGSHSSPKVTILCWTLA*
Ga0114364_10146677	F105180	N/A	MITSFLTGLVLGVIAGLLISRKNRSKLEAAEAKGKTILDALKGK*