Scaffold Ga0114364_1007927

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1007927
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5118
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F002227	Metagenome	580	Y
F090064	Metagenome	108	N
F097203	Metagenome	104	Y
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_10079271	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIINGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREEGDRIIQRASETETL*
Ga0114364_100792712	F097203	N/A	MNYPQSIPAAYQSADLERAYRLGWNHGHGIACHNVPSIGDSIDRSIDWVGLGKTVNSDNIAEYHEALCFAAESNSRDYSPFEFIAHEFNESDDSESLWEAFEAGIADSIREDLKGYSYAELV*
Ga0114364_100792714	F000922	GGA	MPKEVWQKACSLYLAGMEWDAIADKLKVNKTTLCKRASLEGVTKVKREMKAEFPSEISVKTEKSLEALSALVRSKLAADAASTLERIDSYALEGIKDEATRETILGSVAKRSALVFGWSEAGEQASVSINLLGSMPDRSVELNVTSEPPKE*
Ga0114364_10079274	F090064	GAG	MSMKIYWTVYFGKFRRSEYTFQGENAKRDAQRLAKRLGGRVVREKGKQ*
Ga0114364_10079275	F102590	GGAGG	VKSEFTPGPWRTTGINVRAGDALICYAMNHHANAETPEPEKLANARLIAAAPDLLLALERLTHPMADDEDLSFARDCIANARGK*
Ga0114364_10079277	F103133	N/A	MRYKIQLSTLTGGWSDLRESANDGQTYETCLFPTRKAAIAAREEFGELSEFLETTRIVTAETPETENIYA*