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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008267 Open in IMG/M |
| Scaffold ID | Ga0114364_1000230 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33490 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (67.27%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000961 | Metagenome / Metatranscriptome | 820 | Y |
| F004448 | Metagenome / Metatranscriptome | 437 | Y |
| F013503 | Metagenome | 270 | Y |
| F034844 | Metagenome | 173 | Y |
| F053889 | Metagenome | 140 | Y |
| F066584 | Metagenome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114364_100023015 | F000961 | AGAAG | MSDIDLVKYGVLWQKVEDYERRFDDMDKKMDKMEIQLEKLVELANKGRGGFWAGMVFISALSSAVGYISHFIGKQN* |
| Ga0114364_100023021 | F004448 | N/A | MTNREIFVNFMRDVLRPRTMEEIINKELREAHLSKMDAEKALEYANSVVEYNRQRIRRLEERLKELGDNHA* |
| Ga0114364_100023029 | F066584 | GGA | MKHSNYTKHGIEGPFSPPPTLVDKVLFWLSGFVAGLIFTLLITGN* |
| Ga0114364_100023031 | F034844 | AGGA | MNYADEHTDFDRMTCTCDHTEVDCFFDSYTDSLHFAYIGGQLVTEMLRDSVIQDFERQYIKACKEEAYNDKLDAAIARYELKKELS* |
| Ga0114364_100023037 | F013503 | GGA | MSFAKPTPKQESLFDEEQKLMCSVPGCPSRWSVHMSGDKPKCSKHQWEKNASDYKRPIVAKPVSQTVQQWYEKENF* |
| Ga0114364_100023039 | F053889 | N/A | MKSLTDAVMDNQCPYLSQIKPYTQQGTFLDYLANHYALMAMNLATIDHARHMSKQLMLDFPTLNILIIQRLKELRNEPSSDIHS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |