Scaffold Ga0114364_1000027

Overview

Basic Information

• Taxon OID: 3300008267
• Scaffold ID: Ga0114364_1000027
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83703
• Total Scaffold Genes: 162
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013300	Metagenome / Metatranscriptome	272	Y
F015596	Metagenome / Metatranscriptome	253	Y
F023591	Metagenome / Metatranscriptome	209	Y
F061681	Metagenome / Metatranscriptome	131	Y
F104786	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114364_1000027142	F061681	N/A	MQDKSIINWELHQKLMAKKKTIKICTGVGLNMFFPEYITIEIPTKIDTEIKKPKTSKKNG
Ga0114364_100002720	F013300	N/A	MKKVNIKDLGPEYSIFGNKGNVWSGTAHAYKSGFGPGSGNLCGTPALSSNHARYEGIEEVGCPECLAKLQEQVN*
Ga0114364_100002729	F104786	N/A	MLKEAIELLSKFGLVDGNTLPDSTPGNQYQFRSCSPNLIVPAPGMKTVITGFLKDNGYTVKAMGTMLKISK*
Ga0114364_100002763	F023591	N/A	MSCSGGKSTKKGRYNKANNLKKPTGYTVDKKGNIKPTYN*
Ga0114364_100002795	F015596	N/A	MKRYIYYNKFDSTKEPQGKLEAINLEDAILLASHIKEMSKDDFLKVFKVEEYERTRK*