Scaffold Ga0114363_1033449

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1033449
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2151
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008415	Metagenome / Metatranscriptome	333	N
F027426	Metagenome	194	Y
F028431	Metagenome / Metatranscriptome	191	N
F096865	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10334491	F096865	N/A	MQREMLSEASKNWDIYIKECMQVAASSITPYKIIPYAKNKGIKQAVIEKQTKKAA*
Ga0114363_10334494	F027426	GGAGG	MFNRSDLNALLATVIIILLGYGVMHLLIFLDGYYKLSIY*
Ga0114363_10334498	F008415	AGGAGG	MTSIQQLQEHIKRLNDEKLLNQFDLYNTYQVKDIKEVIYYRLVECELENRRLLTHKIMEDDYEYAQ*
Ga0114363_10334499	F028431	GGAGG	MHNKKTIILNGLDVVTNRKMISIKLPVWKKLISCSRHEEITTTKLIDKLITKYIEDNNYDIEKIFNDNLEVKQDVLTSLIDYNFNTQDQIEYK*