Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1033449 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2151 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008415 | Metagenome / Metatranscriptome | 333 | N |
F027426 | Metagenome | 194 | Y |
F028431 | Metagenome / Metatranscriptome | 191 | N |
F096865 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_10334491 | F096865 | N/A | MQREMLSEASKNWDIYIKECMQVAASSITPYKIIPYAKNKGIKQAVIEKQTKKAA* |
Ga0114363_10334494 | F027426 | GGAGG | MFNRSDLNALLATVIIILLGYGVMHLLIFLDGYYKLSIY* |
Ga0114363_10334498 | F008415 | AGGAGG | MTSIQQLQEHIKRLNDEKLLNQFDLYNTYQVKDIKEVIYYRLVECELENRRLLTHKIMEDDYEYAQ* |
Ga0114363_10334499 | F028431 | GGAGG | MHNKKTIILNGLDVVTNRKMISIKLPVWKKLISCSRHEEITTTKLIDKLITKYIEDNNYDIEKIFNDNLEVKQDVLTSLIDYNFNTQDQIEYK* |
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