Scaffold Ga0114363_1017442

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1017442
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3220
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020143	Metagenome	225	N
F026865	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10174421	F026865	N/A	YEVATVSVATGISPKDLLEVDPAIYSAIKAILQEKYYNNKKATVRRK*
Ga0114363_10174422	F020143	AGG	MKPFYAGLPGRQRSLAATPSIYVENLDELMATMKRVEPDLQKEFRRELTKAVKPVAKLAQSFVPHEPFPGWRDVEPSYPPAWGWANDTTHRGRTYGESKRSRWKWSQTEVIRGIRVSTAKTKVQRIKGITYGVTALAIINKSVPGIIYELAGFGTSRSRGRTRRTSRNPNASESFIGKLEGTANSAGYKEKRLIYRASQQLGGQVNDNLYGVLKKYLGKEFRG*