Scaffold Ga0114363_1002708

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1002708
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12700
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (93.10%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004668	Metagenome / Metatranscriptome	428	Y
F018914	Metagenome	232	N
F026545	Metagenome	197	N
F048273	Metagenome	148	N
F066571	Metagenome	126	N
F068576	Metagenome	124	N
F093778	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_10027081	F093778	AGGA	MDAELQALNEATAASAAQGLQIILLDQIDGVWTAIASDKMDGEPLVTGTGATRTDALLALTAALESR*
Ga0114363_10027082	F048273	GGAG	MTPRQIDQLIERLDSHSAKLDEVRSELNRITGGLVVAGALLFSVLVPLIASLLSK*
Ga0114363_100270820	F026545	GGAGG	MAGVKTKRAGAAKPPVWTVTNCTDCGKVIDYTDPKRQVFPGTRVLVIHEKGRRFEWRHKACVK*
Ga0114363_100270825	F068576	GGA	MQEGHNKAVDISQPSNRSKSNRVLSTRAARQRRAGGDHHGTTREQREFQQACAAWALKLDVKLNALFNLMPQFGKTTHWARERYYGGTFVTDADLYWINARVNDESEIEQSAKLQRYAAAVDLMCRVCAGDEDTTPSCWDQTCPLRSVSPLPLRGAK*
Ga0114363_100270826	F066571	AGGAG	MRYDLRAAARLVVLRSLTLPLVSSQRQGLLWGSVDARTTTTAMPGQRGTSGATPLLLHHYWRANG*
Ga0114363_100270827	F018914	GGAGG	MAKQDKFAQLRDWIALSQSVLGLDHWEITVVEAASDVDSWADIEAHPQQPTADLRVSFDFWKQTPEKQRLVLSHELMHLVVSRYARVTENLEDSLGSLAWAVIEPQLEDAEERAVEHMARIVAPYLSLPNFPKA*
Ga0114363_10027085	F004668	GGAGG	MSTSDHIEQIHEHGWTRVDTAPGEWVAVVPNDNHTAFGGTLWKVAEDGKEYAEGVTAGYPVSAALDYDAAGRALAVIIKQEMSQ*