NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114363_1002708

Scaffold Ga0114363_1002708


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1002708 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12700
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (93.10%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004668Metagenome / Metatranscriptome428Y
F018914Metagenome232N
F026545Metagenome197N
F048273Metagenome148N
F066571Metagenome126N
F068576Metagenome124N
F093778Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0114363_10027081F093778AGGAMDAELQALNEATAASAAQGLQIILLDQIDGVWTAIASDKMDGEPLVTGTGATRTDALLALTAALESR*
Ga0114363_10027082F048273GGAGMTPRQIDQLIERLDSHSAKLDEVRSELNRITGGLVVAGALLFSVLVPLIASLLSK*
Ga0114363_100270820F026545GGAGGMAGVKTKRAGAAKPPVWTVTNCTDCGKVIDYTDPKRQVFPGTRVLVIHEKGRRFEWRHKACVK*
Ga0114363_100270825F068576GGAMQEGHNKAVDISQPSNRSKSNRVLSTRAARQRRAGGDHHGTTREQREFQQACAAWALKLDVKLNALFNLMPQFGKTTHWARERYYGGTFVTDADLYWINARVNDESEIEQSAKLQRYAAAVDLMCRVCAGDEDTTPSCWDQTCPLRSVSPLPLRGAK*
Ga0114363_100270826F066571AGGAGMRYDLRAAARLVVLRSLTLPLVSSQRQGLLWGSVDARTTTTAMPGQRGTSGATPLLLHHYWRANG*
Ga0114363_100270827F018914GGAGGMAKQDKFAQLRDWIALSQSVLGLDHWEITVVEAASDVDSWADIEAHPQQPTADLRVSFDFWKQTPEKQRLVLSHELMHLVVSRYARVTENLEDSLGSLAWAVIEPQLEDAEERAVEHMARIVAPYLSLPNFPKA*
Ga0114363_10027085F004668GGAGGMSTSDHIEQIHEHGWTRVDTAPGEWVAVVPNDNHTAFGGTLWKVAEDGKEYAEGVTAGYPVSAALDYDAAGRALAVIIKQEMSQ*

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