Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1002708 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12700 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (93.10%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004668 | Metagenome / Metatranscriptome | 428 | Y |
F018914 | Metagenome | 232 | N |
F026545 | Metagenome | 197 | N |
F048273 | Metagenome | 148 | N |
F066571 | Metagenome | 126 | N |
F068576 | Metagenome | 124 | N |
F093778 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_10027081 | F093778 | AGGA | MDAELQALNEATAASAAQGLQIILLDQIDGVWTAIASDKMDGEPLVTGTGATRTDALLALTAALESR* |
Ga0114363_10027082 | F048273 | GGAG | MTPRQIDQLIERLDSHSAKLDEVRSELNRITGGLVVAGALLFSVLVPLIASLLSK* |
Ga0114363_100270820 | F026545 | GGAGG | MAGVKTKRAGAAKPPVWTVTNCTDCGKVIDYTDPKRQVFPGTRVLVIHEKGRRFEWRHKACVK* |
Ga0114363_100270825 | F068576 | GGA | MQEGHNKAVDISQPSNRSKSNRVLSTRAARQRRAGGDHHGTTREQREFQQACAAWALKLDVKLNALFNLMPQFGKTTHWARERYYGGTFVTDADLYWINARVNDESEIEQSAKLQRYAAAVDLMCRVCAGDEDTTPSCWDQTCPLRSVSPLPLRGAK* |
Ga0114363_100270826 | F066571 | AGGAG | MRYDLRAAARLVVLRSLTLPLVSSQRQGLLWGSVDARTTTTAMPGQRGTSGATPLLLHHYWRANG* |
Ga0114363_100270827 | F018914 | GGAGG | MAKQDKFAQLRDWIALSQSVLGLDHWEITVVEAASDVDSWADIEAHPQQPTADLRVSFDFWKQTPEKQRLVLSHELMHLVVSRYARVTENLEDSLGSLAWAVIEPQLEDAEERAVEHMARIVAPYLSLPNFPKA* |
Ga0114363_10027085 | F004668 | GGAGG | MSTSDHIEQIHEHGWTRVDTAPGEWVAVVPNDNHTAFGGTLWKVAEDGKEYAEGVTAGYPVSAALDYDAAGRALAVIIKQEMSQ* |
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