Scaffold Ga0114363_1001793

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1001793
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25246
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.15%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F020344	Metagenome / Metatranscriptome	224	N
F029443	Metagenome / Metatranscriptome	188	Y
F044503	Metagenome	154	Y
F047062	Metagenome	150	Y
F048316	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100179312	F001775	GAG	MEFSTDNQKIQIAILSFLAGVILAFVVYPRPEQETVYKFTTKVESDTIYTRVVDTVYVPKMWIKSQVLRDTVLINYQAQISLFKASIPSEYGSTHLSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIVQKAKGIYLGAGVNSLLDPSVKVSYLDNKYLFQYGYQPVTKIHSLGISKKLF*
Ga0114363_100179315	F008081	N/A	MEESEILNPFGYGKASRVIDENRKPTEWWIDYVSINQVVAENEFYVLFEDGFLIKKGKSKFQSSQYLKGDRFRSFRDFHEQVKQSFLL*
Ga0114363_100179318	F047062	N/A	MNYETENFYDQEITFTYEGQDYLWIGDYTIEHTGEDESEFAPAYGEMEITIDHTRSLSSYEHGYEVIPTRSMLMELELEIERNY*
Ga0114363_10017932	F020344	N/A	MIAIPQGANSSIYVTLTDKRETNSNVYIFKFKHEVTNEEVTLTLTDISTFKDRVSKFAITTANFENRTIGFWRYYVTQSGSGAEIIATGKMQLTAPNLSTAGVIRYNGYNGDYKTYTTT*
Ga0114363_100179326	F044503	N/A	MRRRNLTEYEKEVIFERWQDRIPTKVIAIEFGVSYMCIYNQLKRRNLVG*
Ga0114363_100179328	F008073	N/A	VNEKNVSVWINQYYAHHQSQIVQEVQAMNRVDREPTEEEIAQWIEIGKQIFRDNYQSAKESGFCKDLAEWGGNWFNKFQEKGILKPWEYPVEDIEKDVRRELRISTRYIDEVTVGAKSKNKIWKLFILESIKENRNLDKLIGKS*
Ga0114363_100179330	F005529	N/A	MPRMLPKSPLDYSLEIRYKLSSGEWSAWMNKGKGSFQSIEIVQRQIRLLAASYYGRQKEIRFEWNGWLCDFAGLPTGEVISLK*
Ga0114363_10017935	F029443	N/A	MTLANLVAKLKAIQEAHPMIRTFGEGDIYDYTDNGGEIVYPVFWTVVRPSQYANTTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNTYSFNTPPQASVEFFQERFDDFAAGVSIDIEITAPIPLNLCQVPTN*
Ga0114363_10017938	F048316	GGA	MKNFFKWAKGFLSESGEASSKRLVGVISAIALSYTLIRNQNEPLVYSVAALSAAALGITAAEKIFKKPTDKNENQPPS*