Basic Information | |
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Taxon OID | 3300008266 Open in IMG/M |
Scaffold ID | Ga0114363_1001407 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14251 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F007222 | Metagenome / Metatranscriptome | 355 | Y |
F015073 | Metagenome / Metatranscriptome | 257 | Y |
F055557 | Metagenome / Metatranscriptome | 138 | N |
F085385 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114363_100140716 | F085385 | GGAG | MYTIMEVAAWMMLGILTGFTGGYTLGLKEGKREGFIRGKIAARKNMEVR* |
Ga0114363_100140717 | F015073 | GGA | MGFLDNYETVNQKVKRLHATYPTNRIETSIIDWQPEKGYILIECRIYRHYEDEKPAAIDYAHGMVGAYNAQMKRWYVEDTVSSAIGRCASVVLGTDEKPSREDMNQVEHMPKAFVEDDPWAKPIWEEGFTTAKSAVAEIESKLGGELVAESPICAHGHMLLKEGTAKTGKPYRGHVCTEKVKANQCSPIWYVLASDGKWKVQL* |
Ga0114363_100140719 | F055557 | N/A | MKISHEQEWDAARVAIERVEEIDGHPDHASRYNKQLNFHDYILEVAESIGAEFAVAKYFGIQDFNPRASRFKRTADVGSIIEVKWTKYDAGSLIIYDSDRNTDIAILVTGKSPNYVLKGWIPVAIAKNQKWRRRDQPTYWVDQYNLHPIENLRRSSHGEATLPMQG* |
Ga0114363_10014078 | F007222 | GGAG | MANKAGRGTFAITVDPVEFRNLIGLLNKLDKETQQEIRDGALPLSKRLAGQLLMFSQSAPAPQTKLVAQTIDAKRDRLIRVDIGGSKKVGRKYGGEQSKSGRGAKVRQQAAPAGALLWGTEFGSHKGVDSLGRAYTDRFKAPSNKRGYWITPAVDYYVPVVAREYAEMVQTVVKKLGLD* |
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