NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114363_1000365

Scaffold Ga0114363_1000365


Overview

Basic Information
Taxon OID3300008266 Open in IMG/M
Scaffold IDGa0114363_1000365 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29666
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (83.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F008183Metagenome / Metatranscriptome337Y
F009393Metagenome / Metatranscriptome318Y
F045714Metagenome152Y
F074583Metagenome119Y
F093537Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0114363_100036515F000220GGAMSEEKPADILSKVLSYVDSPFKLFALILMAVFAFAGYFVWQNQELLMGAYKESKKMPSIVEDRVEDAAAHLFKTTNATIVAVFKVNPMFGTRVLYRAYTKEGRDKTNDGLDVGLFTQNANNNADVVRLMASEIPCGEYRSAQSEMGLWYIAKGVTYTCRISIPPDPNRFVGQITVGWDNEPADIQVARTMMEIAATMLSRSKQ*
Ga0114363_100036518F008183GGAGMAVEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLEELVALANKGRGGLWFGMTVVSGASAVVGYFLSYWKH*
Ga0114363_100036519F009393AGGAGMSTNSQIAFNPQGKTVVIAAAGTAPTGVQAPVYEKFNPQNAGQYRFINNGTTTVFLGTGPTAALAQAASVAPVAGTPSDAIVLLPGAVEILRFNIDTYFSGLSSSAATVYVTPGQGL*
Ga0114363_100036537F045714AGAAGGMQDNILIPKYRKGKKPVKVRKPSKPIDGINHRLLREQALAAQAQEVAEIEPADDAAPTREELEAKATELGIRFDGRTKDKKLGQLIQDRLSENTGE*
Ga0114363_100036545F074583AGGAGMTKQRETPNFATWQHDTLAKFATEVYIRLQDEQAANEQLRMDLKDAMKLARIENMKDNAS
Ga0114363_10003657F093537GGAGGMATTKIKDRYMTIRLPADIEIELRKMAERNTRTLAAQILHCVKMELERQQAQETKA*
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