Scaffold Ga0114363_1000106

Overview

Basic Information

• Taxon OID: 3300008266
• Scaffold ID: Ga0114363_1000106
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90035
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (21.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003818	Metagenome / Metatranscriptome	467	Y
F013528	Metagenome / Metatranscriptome	270	Y
F041758	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114363_100010635	F003818	N/A	MIILHPNNQQYIALNKYKNNASELLFVKDGSGRYIVGLEVLDDPNFLSIHNQLNELERIEYTPFPPEPEI*
Ga0114363_100010688	F013528	AGGA	MSMVQECLKWKATYDPTPPKPNKTYNKFFWWRRYQEHKTLSKMASIWDKAANGDYDVSPYWKQREWEFWFEEQEIAKFKSNYTGHIENFGWAERQITKLFWERRKRLLNDAERDEKNRWELLVKDLKTCFGGDEDIIKSMFESFEGTMIEFIDAYRNSRNLPKIQPVPKF*
Ga0114363_100010691	F041758	AGGA	MKKPMKDINPAWEAEIKKQLDAIWENRYRLSLSNLEMLCRLANKTKL*