Scaffold Ga0114336_1088407

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1088407
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1484
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018913	Metagenome / Metatranscriptome	232	Y
F063620	Metagenome / Metatranscriptome	129	N
F090316	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_10884073	F063620	N/A	MTNPIIPKIAYIPLEYHMSVEDFLEVWKDMEMEEEPTQEDYDTFILDRGKSYFYDMRGELELYIRLTEDN*
Ga0114336_10884075	F090316	GAGG	MPDDLQKEEELLFKALKEHKEKKSQEPIVKPQDDTSNILPAVIAAVL*
Ga0114336_10884076	F018913	N/A	MTNQQIAQELLKVICKSEAHNTAWMLQEVLQHLRKQLSGQNPVDFKDELNVMYVLGYDDCLKDIDGICDELLEL*