Scaffold Ga0114336_1006646

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1006646
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7714
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F001280	Metagenome / Metatranscriptome	732	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014017	Metagenome / Metatranscriptome	266	Y
F023851	Metagenome / Metatranscriptome	208	Y
F078716	Metagenome / Metatranscriptome	116	N
F088905	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100664616	F014017	N/A	MDIEEYQDERIRRQISNEIRGLELPPEWRPHEVIRYIVRIIEKGV*
Ga0114336_100664619	F088905	N/A	MSDNTEKDIVATPVVEAKPEIKEEPKVEVKAEAAPAADSVVDYWANAWANRGV*
Ga0114336_10066462	F012975	AGG	MLNLTLKGVEVFIKRSTTKNQESYWENYDLLIWKQSAGGFTDIKGMFRKDQWGVAERIPVNENGIWKLPSKYVRHFR*
Ga0114336_100664620	F001280	GAGG	MCIECGCEAFGSETGIIPVTVTDVSRDGDSGLTLNMTSTPEQTRQFINE*
Ga0114336_100664621	F078716	N/A	MSDNGTGTTPAPISEPSGAVTSRETPRKYPKQGTRSGIKIDQNKHGIRRETSLDPKPPRKTRPKKV*
Ga0114336_10066464	F000473	AGG	MEFINKDKNHFKYGINQWTGEPNKPVFYNKVMADAVRGIQKPVTGLQMDIVKYPEFLCLRLYEDNFIQFTGNKKEMVIDYLQKVKKVIESYGVRCELEGVPSQNVLGKGI*
Ga0114336_10066465	F023851	N/A	MCETCISNKFEPRWVIILSGRQLGPEAVKEFIVKKRYIGNDIAASELFV*