Scaffold Ga0114336_1005861

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1005861
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8338
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F042904	Metagenome / Metatranscriptome	157	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100586110	F072349	AGGTGG	VDKVLCYSCNKSKNQLASKKSNLLPINLLICEGCNTSKFEPRWIVVLSGRQFGAEYVKDYISKKRYVGVEITASELLI*
Ga0114336_100586116	F042904	GGA	MDENKQTVLEGIIEEVATDLYNKWSEALPDAERNQQAFSAMSKNAHETTVFVIQNFMNKFNAAADELKDQ*
Ga0114336_10058614	F014140	N/A	MNRYFIKMEIEVEVDAFNTEDAKEYINDIFNIDDEIKKVNIVKITTK*
Ga0114336_10058616	F066776	AGG	LLHLTEKGVEIFIKRSQTKLQESFWNNYDLVIWKKDSGGYTDITGMYRKDAWGKAENISVSREGIWKLPKRYVKYFK*
Ga0114336_10058619	F011394	AGGAG	MFINSASDREKKHFKYGVNEWTGEPNKPVFYTKEMSKKLRELKKPASDLQMHIVKYPEFLAIRLYEDNFAQYDGSMRIRVIEYVEMVKNILESYGVRVELEGKPGGKRG*