NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114336_1005715

Scaffold Ga0114336_1005715


Overview

Basic Information
Taxon OID3300008261 Open in IMG/M
Scaffold IDGa0114336_1005715 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17834
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (68.75%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Associated Families18

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)5.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000447Metagenome / Metatranscriptome1128Y
F000852Metagenome / Metatranscriptome860Y
F001043Metagenome / Metatranscriptome794Y
F001460Metagenome / Metatranscriptome690Y
F002245Metagenome / Metatranscriptome578Y
F002387Metagenome / Metatranscriptome565Y
F003379Metagenome / Metatranscriptome490Y
F003422Metagenome / Metatranscriptome487Y
F003965Metagenome / Metatranscriptome459Y
F005741Metagenome / Metatranscriptome391Y
F006744Metagenome / Metatranscriptome365Y
F007921Metagenome / Metatranscriptome342Y
F020166Metagenome / Metatranscriptome225Y
F036238Metagenome170Y
F039631Metagenome / Metatranscriptome163Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0114336_100571510F003965AGGTGGMTTLINTMCREHNPMKSAISEVVDTQYTFCQDCEQNIERWYDDTDYERLPMWTNWKVSN*
Ga0114336_100571513F006744AGAAGGMNLDEFRAYVEATRQASKAEALSVLSATMSVSTTTKGDN*
Ga0114336_100571515F000447GGAGMGYIEIFRMNDEGAGWVDLSEATPDEMFNIELGLLNEGAFE*
Ga0114336_100571521F002245N/AMKVPHTVEFEAIIDLDKIPSHLLPALVSMDAYSIEKMCKGATLYALGMSNVLPLANENNTWAEVTIKEGN*
Ga0114336_100571525F005741AGGMANRFRVEIYDANKLNDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKVTAMFLDEYIVNKTKSKINNVEASQLLQ*
Ga0114336_100571528F003422N/AMTNELVSTKYTFACDPDECDCLIELTSSDGFGFPSGVMQITCPCGRKPTLLSVVTATIAPTTQTKEEQMETTTIGSDAFHSPAVEYNPDLLVTYKVIKGYSDPEYTTSKVASLEWDLHNGRQSQKTVGVLQDKINTAKDIIAEAYPDSGDQDTLRSIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA*
Ga0114336_100571529F000311GGAGGMYFELTAPDRLSLERAYWDAQITGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDKEATGY*
Ga0114336_100571530F001043AGGAGMSDYREGFDDGYKFAREEIMEKLSEIDINDIDSWILSKLSEMIEGGDL*
Ga0114336_100571532F036238GGCGGMGDRANFGFKQSNGDVIVLYGHWAGHEMLAQLASAVEAARPRWTDEGYATRIAISQLVGKDWESETGWGIYINSIPDNEHKIPVIDWRTQTFSLHEEASYDEDTTVNGMSNEPMFTQTLDAFINKYSLVTVN*
Ga0114336_100571534F002387AGGCGGMSSFLEDVNQMVIDACYQDIAEQLLENWINSNLEEGQYYADKQFAWMSDDKFVQSEFNKFYNLTEIDEDYFEIL*
Ga0114336_100571536F001460GGAGGMLGYTKDDLDRMTNAIHDAKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFD*
Ga0114336_100571537F063705GGAMKLHLISLNQDWEDTKNGAPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERVNE
Ga0114336_100571539F000441AGGAMSDAYLNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQTDLM*
Ga0114336_10057154F003379AGGAGMKKVWALMVLIATAILSGALLSRFLNWAGEKEIFDFDLNEDVDDELSAL*
Ga0114336_100571540F000852AGGAMTTKREYLKQQGITVGVRGRFSGAAKVALAEAVAKGVTFEAETPVKKAK*
Ga0114336_100571546F007921N/AMIDWLVNRIFRWDSLRHAIFDEVRLYQSIDRGMWEIENLNPTNLTWSEGDRWYGWTFNPANNRYYFDDIGNESLMGLWEDQWLREADEAGLK*
Ga0114336_100571547F020166N/AMKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPEDVQ*
Ga0114336_10057158F039631AGGMTTLDKNTIKHSRFGHLDLEQRIRLGAEMVANGELVSFRGASAETYKKVMALANKIKQEREFPQCPCGECD*

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