Scaffold Ga0114336_1005715

Overview

Basic Information

• Taxon OID: 3300008261
• Scaffold ID: Ga0114336_1005715
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17834
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (68.75%)
• Novel Protein Genes: 18
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Associated Families: 18

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.236
  • Depth (m): 5.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003379	Metagenome / Metatranscriptome	490	Y
F003422	Metagenome / Metatranscriptome	487	Y
F003965	Metagenome / Metatranscriptome	459	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007921	Metagenome / Metatranscriptome	342	Y
F020166	Metagenome / Metatranscriptome	225	Y
F036238	Metagenome	170	Y
F039631	Metagenome / Metatranscriptome	163	Y
F063705	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114336_100571510	F003965	AGGTGG	MTTLINTMCREHNPMKSAISEVVDTQYTFCQDCEQNIERWYDDTDYERLPMWTNWKVSN*
Ga0114336_100571513	F006744	AGAAGG	MNLDEFRAYVEATRQASKAEALSVLSATMSVSTTTKGDN*
Ga0114336_100571515	F000447	GGAG	MGYIEIFRMNDEGAGWVDLSEATPDEMFNIELGLLNEGAFE*
Ga0114336_100571521	F002245	N/A	MKVPHTVEFEAIIDLDKIPSHLLPALVSMDAYSIEKMCKGATLYALGMSNVLPLANENNTWAEVTIKEGN*
Ga0114336_100571525	F005741	AGG	MANRFRVEIYDANKLNDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKVTAMFLDEYIVNKTKSKINNVEASQLLQ*
Ga0114336_100571528	F003422	N/A	MTNELVSTKYTFACDPDECDCLIELTSSDGFGFPSGVMQITCPCGRKPTLLSVVTATIAPTTQTKEEQMETTTIGSDAFHSPAVEYNPDLLVTYKVIKGYSDPEYTTSKVASLEWDLHNGRQSQKTVGVLQDKINTAKDIIAEAYPDSGDQDTLRSIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA*
Ga0114336_100571529	F000311	GGAGG	MYFELTAPDRLSLERAYWDAQITGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDKEATGY*
Ga0114336_100571530	F001043	AGGAG	MSDYREGFDDGYKFAREEIMEKLSEIDINDIDSWILSKLSEMIEGGDL*
Ga0114336_100571532	F036238	GGCGG	MGDRANFGFKQSNGDVIVLYGHWAGHEMLAQLASAVEAARPRWTDEGYATRIAISQLVGKDWESETGWGIYINSIPDNEHKIPVIDWRTQTFSLHEEASYDEDTTVNGMSNEPMFTQTLDAFINKYSLVTVN*
Ga0114336_100571534	F002387	AGGCGG	MSSFLEDVNQMVIDACYQDIAEQLLENWINSNLEEGQYYADKQFAWMSDDKFVQSEFNKFYNLTEIDEDYFEIL*
Ga0114336_100571536	F001460	GGAGG	MLGYTKDDLDRMTNAIHDAKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFD*
Ga0114336_100571537	F063705	GGA	MKLHLISLNQDWEDTKNGAPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERVNE
Ga0114336_100571539	F000441	AGGA	MSDAYLNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQTDLM*
Ga0114336_10057154	F003379	AGGAG	MKKVWALMVLIATAILSGALLSRFLNWAGEKEIFDFDLNEDVDDELSAL*
Ga0114336_100571540	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALAEAVAKGVTFEAETPVKKAK*
Ga0114336_100571546	F007921	N/A	MIDWLVNRIFRWDSLRHAIFDEVRLYQSIDRGMWEIENLNPTNLTWSEGDRWYGWTFNPANNRYYFDDIGNESLMGLWEDQWLREADEAGLK*
Ga0114336_100571547	F020166	N/A	MKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPEDVQ*
Ga0114336_10057158	F039631	AGG	MTTLDKNTIKHSRFGHLDLEQRIRLGAEMVANGELVSFRGASAETYKKVMALANKIKQEREFPQCPCGECD*