Basic Information | |
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Taxon OID | 3300008261 Open in IMG/M |
Scaffold ID | Ga0114336_1005715 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17834 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (68.75%) |
Novel Protein Genes | 18 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 14 (77.78%) |
Associated Families | 18 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.236 | Alt. (m) | Depth (m) | 5.7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000311 | Metagenome / Metatranscriptome | 1326 | Y |
F000441 | Metagenome / Metatranscriptome | 1136 | Y |
F000447 | Metagenome / Metatranscriptome | 1128 | Y |
F000852 | Metagenome / Metatranscriptome | 860 | Y |
F001043 | Metagenome / Metatranscriptome | 794 | Y |
F001460 | Metagenome / Metatranscriptome | 690 | Y |
F002245 | Metagenome / Metatranscriptome | 578 | Y |
F002387 | Metagenome / Metatranscriptome | 565 | Y |
F003379 | Metagenome / Metatranscriptome | 490 | Y |
F003422 | Metagenome / Metatranscriptome | 487 | Y |
F003965 | Metagenome / Metatranscriptome | 459 | Y |
F005741 | Metagenome / Metatranscriptome | 391 | Y |
F006744 | Metagenome / Metatranscriptome | 365 | Y |
F007921 | Metagenome / Metatranscriptome | 342 | Y |
F020166 | Metagenome / Metatranscriptome | 225 | Y |
F036238 | Metagenome | 170 | Y |
F039631 | Metagenome / Metatranscriptome | 163 | Y |
F063705 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114336_100571510 | F003965 | AGGTGG | MTTLINTMCREHNPMKSAISEVVDTQYTFCQDCEQNIERWYDDTDYERLPMWTNWKVSN* |
Ga0114336_100571513 | F006744 | AGAAGG | MNLDEFRAYVEATRQASKAEALSVLSATMSVSTTTKGDN* |
Ga0114336_100571515 | F000447 | GGAG | MGYIEIFRMNDEGAGWVDLSEATPDEMFNIELGLLNEGAFE* |
Ga0114336_100571521 | F002245 | N/A | MKVPHTVEFEAIIDLDKIPSHLLPALVSMDAYSIEKMCKGATLYALGMSNVLPLANENNTWAEVTIKEGN* |
Ga0114336_100571525 | F005741 | AGG | MANRFRVEIYDANKLNDITIYSDQGVDKEYLTELVFSNIRNFSGKINAYVFDNVKKKKVTAMFLDEYIVNKTKSKINNVEASQLLQ* |
Ga0114336_100571528 | F003422 | N/A | MTNELVSTKYTFACDPDECDCLIELTSSDGFGFPSGVMQITCPCGRKPTLLSVVTATIAPTTQTKEEQMETTTIGSDAFHSPAVEYNPDLLVTYKVIKGYSDPEYTTSKVASLEWDLHNGRQSQKTVGVLQDKINTAKDIIAEAYPDSGDQDTLRSIAEALGIELTRTIEFTATIEVSGTVEVDLLEDYELEDDIADNLYVDSQSGRIEIGDIEVCHVREA* |
Ga0114336_100571529 | F000311 | GGAGG | MYFELTAPDRLSLERAYWDAQITGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDKEATGY* |
Ga0114336_100571530 | F001043 | AGGAG | MSDYREGFDDGYKFAREEIMEKLSEIDINDIDSWILSKLSEMIEGGDL* |
Ga0114336_100571532 | F036238 | GGCGG | MGDRANFGFKQSNGDVIVLYGHWAGHEMLAQLASAVEAARPRWTDEGYATRIAISQLVGKDWESETGWGIYINSIPDNEHKIPVIDWRTQTFSLHEEASYDEDTTVNGMSNEPMFTQTLDAFINKYSLVTVN* |
Ga0114336_100571534 | F002387 | AGGCGG | MSSFLEDVNQMVIDACYQDIAEQLLENWINSNLEEGQYYADKQFAWMSDDKFVQSEFNKFYNLTEIDEDYFEIL* |
Ga0114336_100571536 | F001460 | GGAGG | MLGYTKDDLDRMTNAIHDAKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFD* |
Ga0114336_100571537 | F063705 | GGA | MKLHLISLNQDWEDTKNGAPLKDDEYDPSDDYFQGAIEATEHLLSVATDIMNNSNERVNE |
Ga0114336_100571539 | F000441 | AGGA | MSDAYLNDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRIEQTDLM* |
Ga0114336_10057154 | F003379 | AGGAG | MKKVWALMVLIATAILSGALLSRFLNWAGEKEIFDFDLNEDVDDELSAL* |
Ga0114336_100571540 | F000852 | AGGA | MTTKREYLKQQGITVGVRGRFSGAAKVALAEAVAKGVTFEAETPVKKAK* |
Ga0114336_100571546 | F007921 | N/A | MIDWLVNRIFRWDSLRHAIFDEVRLYQSIDRGMWEIENLNPTNLTWSEGDRWYGWTFNPANNRYYFDDIGNESLMGLWEDQWLREADEAGLK* |
Ga0114336_100571547 | F020166 | N/A | MKEPKIMKMDWRSLGYWPVYKDGKLTWEKDPEDVQ* |
Ga0114336_10057158 | F039631 | AGG | MTTLDKNTIKHSRFGHLDLEQRIRLGAEMVANGELVSFRGASAETYKKVMALANKIKQEREFPQCPCGECD* |
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