Scaffold Ga0114841_1051552

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1051552
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1998
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F002387	Metagenome / Metatranscriptome	565	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10515521	F000263	N/A	MVDAGVTGLDIMHGELKNLMLIAEQDLADALEQEERSEEAMDSMVRTECEGRLDMLVELYQLTYQLSFAIGARNEA*
Ga0114841_10515522	F050154	AGTAGG	MKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNETREN*
Ga0114841_10515525	F002387	AGGAGG	MASFLEDVNQMVIDACYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDEFIQSEFNKFYNLNEGDEDYFE*