Scaffold Ga0114841_1012676

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1012676
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4493
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005175	Metagenome / Metatranscriptome	409	Y
F055677	Metagenome / Metatranscriptome	138	N
F090367	Metagenome / Metatranscriptome	108	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10126764	F005175	N/A	MIDKELHVEDVIEMYNEKILILQKEIDRLNEEVQALNLQLQKLNNVIS*
Ga0114841_10126765	F105047	GAGG	MKHINYDKVIVEWLDIQSCDNAWSSLDEFDKLLPAKCTTIGYLYEDNKDWIKTFATYSINENLEDFDIGDAVVIPRGCILSIKKIEN*
Ga0114841_10126766	F090367	N/A	MKHKLAQWQEEKKLKNKDAAKFLGLKGTNPTVTLLRWKNCQRIPHPRFMKQITKLTGITPIDFYEAWYETHKL*
Ga0114841_10126769	F055677	AGGA	MKEKIKQVNDLCASNGTYINQHGKKTVSAWSKIKYFREVFGTEFGINCVIQEHSDRYIIMKCIITKCDPEHIIATGYSKQFRDKPGYLEIAETFAITRALSIMGILLEDMTSK