Scaffold Ga0114841

Basic Information
Taxon OID	3300008259 Open in IMG/M
Scaffold ID	Ga0114841_1008591 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5475
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (14.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5475

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (14.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.7026	Long. (^o)	-83.2538	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, USA

Coordinates

Lat. (^o)

41.7026

Long. (^o)

-83.2538

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F025982	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10085912	F002738	N/A	MLLVAMSIETYGLSSEQYEEFFETNIKLAGQLYLKACKILKDQGAGALDFKTTLDLYQECIYATNDDCRRYQKANNPEAIKNDDIFGLSPSREELMAEVQSVNTKVEALVDYLSKLVETTTNGLNGIAKTLVD*
Ga0114841_10085913	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGILLTYAFNKIQSYCL*
Ga0114841_10085915	F001018	N/A	MTQITQAKLGELSVIKLYEHYGALERSLPLLTPESQELAKAELEACANLRSEKVDRIYYAIAAHEDALERIKKEGELITQAKKHHEAQLKSLKGLLNYLRRVLPQDSNKITGRNYQFTLVKKKELTVEISSDPEFWHTEERANYCIEEEITTTKRVVLRSMSGEILDERIEPKTTTKVLPNLDAIRNAYQNGKQLPPGVKVQQEYSVRSKRIFGEPRVELAASEYPGQLLPEDSSTD*
Ga0114841_10085916	F025982	N/A	MSCHDHALKDFELQLEMNCLQADMLKENGVVIPYHMDEYEDLEQKKLKLLLGKRFHQNASHAYWYYLQKEKGGK*
Ga0114841_10085918	F008128	N/A	MKTIPVPKLTVSFAVDLEVEYNSFGGKTAEEIAEALQDELHDLLFELPQVTGVYSTYTSIASDKE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114841_1008591

Overview

Ecosystem & Geography

Associated Families

Sequences