Scaffold Ga0114841_1000769

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1000769
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18696
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005530	Metagenome / Metatranscriptome	397	Y
F010917	Metagenome	297	Y
F013525	Metagenome / Metatranscriptome	270	Y
F050330	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_10007691	F005530	AGGA	MDIIRIDPDFAPETHTVSNTSAQSNPIFTGSGIIRIAVTSGTHVKFGVNPVATVEDVLIPDNQVQYFSFKSGQVVAFIHHGGGSGEINICAVD*
Ga0114841_100076926	F050330	AGGA	MAGETTSTSIGVLYTNRKAKGTYRVYKPKKMPRKKK*
Ga0114841_100076928	F010917	N/A	MSLNKIIFGSRIVKLNFIDKELASKKKIFGEFDSDTNTLTLDKSLDNIQMANTIIHEICHLIHDEYKLDLPLKAEELVCNSTANGLCHILYQNQDLLDFLYKSLKKD*
Ga0114841_10007695	F013525	AGGA	MEDFALKNPDDIKQELDSLSEELANSLYEFRRCEEFRKITFSQLTITKKLEKNCSVAEAEKWAYTADEYKTIIEGLLYAEKKYSIARGKYSNLQSWVDLYRSWLVTNRELSR*