Scaffold Ga0114841_1000300

Overview

Basic Information

• Taxon OID: 3300008259
• Scaffold ID: Ga0114841_1000300
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30002
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (26.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F014228	Metagenome	264	N
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F039112	Metagenome	164	Y
F093771	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114841_100030027	F093771	N/A	MTKESADSVLTSWSLTGTGLLVSYVHQAFGLAVLVASLGYTLWKWRRDYLKDKGAN*
Ga0114841_100030030	F014228	N/A	MNSKLNPNRLAMWIIPMAATLAVLSSCASVKPVLESVVVRDTVIVTQTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKERKQRGWTLEGGLTMLALVLVAAYFVKRWIDKLLE*
Ga0114841_100030032	F009600	N/A	MRILDPGQLSYKIVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLEKHDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIPKDTAEITFTGLVVTK*
Ga0114841_100030033	F039112	N/A	MTLSFSADVYTEMVQVQQAQIQALQNKVAELQARIEVLEQQAILFI*
Ga0114841_100030036	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDQL*
Ga0114841_100030037	F010908	N/A	LKQILSPFQKYECFAVDGVDYLVIDYTIIQDRDDKLVEWASEMKFKRLKDHKHYTMPISKIITNHKEGRAKLCKCK*
Ga0114841_100030038	F025437	N/A	MRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAINKDHSSVAYAVRMHQSRLIYGDYQHYFKVACGVLEDNPMAWVDKPDYDSMQQELNKLNEVVMELSKYKELYITLKKTFDEF*
Ga0114841_100030046	F024249	N/A	MIFTYNDLKFWLEQADLLPQSYWDALEDYDPDEKNSDEILAKWLGFVHVADFYEYEMQITYVEESYNEDGYTNTTAYPTTSIYRDVPGLDKDIYAKWMNWATQVASEE*