Scaffold Ga0114840_1000392

Overview

Basic Information

• Taxon OID: 3300008258
• Scaffold ID: Ga0114840_1000392
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9664
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (37.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048101	Metagenome / Metatranscriptome	148	N
F048123	Metagenome / Metatranscriptome	148	Y
F062446	Metagenome / Metatranscriptome	130	Y
F078229	Metagenome / Metatranscriptome	116	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114840_10003922	F048101	AGAAG	MKKFKNIKDFLETCSEDEREYIYDLYNNASVSDLIDLLFEHLPADDTIQEIEEYREEMEWDDNEAEKSNKGKRKCDCDFVGCQGC*
Ga0114840_100039230	F078229	N/A	VSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKIKTFKKLKDADAFLDNYESN*
Ga0114840_100039232	F048123	N/A	MKPRYDLTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYKFSLTNNSNISKIAERMYNFRPF*
Ga0114840_100039235	F104482	N/A	MTSEEFEKAMKAQGRFVSKVYYRIRYKDMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR*
Ga0114840_10003926	F062446	AGGA	MTFKPIKVIAFMLIVLAWILMTFFFVGCANVSYKTIPDGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY*