Scaffold Ga0100403_1269324

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0100403_1269324

Scaffold Ga0100403_1269324

Overview

Basic Information
Taxon OID	3300008255 Open in IMG/M
Scaffold ID	Ga0100403_1269324 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	578
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	38.9383	Long. (^o)	-110.1342	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067407	Metagenome	125	N
F069689	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0100403_12693242	F067407	GAGG	MPKQKQKVLNTRLTPEGFKALKELGKLYPRDISLTQIASLAIIEKLKAETYA*
Ga0100403_12693243	F069689	N/A	MKGTEMKAVKVQQGDLLLVADKLPDAAKKINTGATFTVLRGEGVNTHDVVGAFSAYEDGDGTLFLVIDDAKLVHSEHGTETLPSGTFRRVIEREFDYEAMEARKVED*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.