Scaffold Ga0105350_10018794

Overview

Basic Information

• Taxon OID: 3300008224
• Scaffold ID: Ga0105350_10018794
• Source Dataset Name: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1E Hudson Canyon
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3376
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location

• Location Name: Hudson Canyon
• Coordinates
  • Lat. (^o): 39.55
  • Long. (^o): -72.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045797	Metagenome / Metatranscriptome	152	Y
F068236	Metagenome / Metatranscriptome	125	Y
F098234	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105350_100187941	F045797	N/A	EQEYGGTTYMTKWRAYTVGDLPKNFGCIEYETDVEGIDEWFNYKGLTYVRDNR*
Ga0105350_1001879414	F098234	N/A	MEREQLENRIKELTVLIEESSNGVKNLVEEQAAFTKRLDDLDKPKLSPAQFDEIHEIIETALDRFELDPGNCEFELELDYDNRVQINHFDWSNVHRDLTQHIMDRMEEIFAVDEDEE*
Ga0105350_100187942	F068236	AGGA	MLETTGRNRKFTHDQVIEIAGEYLKCKETGQWVSESNVENYEVERINIEIQQFYDREQDKYY*