Scaffold Ga0114916_1073539

Overview

Basic Information

• Taxon OID: 3300008221
• Scaffold ID: Ga0114916_1073539
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 882
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008385	Metagenome	334	Y
F026409	Metagenome	198	Y
F063081	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114916_10735391	F008385	N/A	YKVCIKCSDPADVIEGTKNYCVECWYKHVNGKSFKEVDKQIKEEERFIKKK*
Ga0114916_10735392	F026409	N/A	MKYLIIFILLSSCSFSDYDFNPSTTILKQLIKGAKND*
Ga0114916_10735394	F063081	GGAGG	MSDKINFKLFKPFGSTVAKAVMPLGLMKDFQDDLKQIRQDKDKQ