Scaffold Ga0114910_1005451

Overview

Basic Information

• Taxon OID: 3300008220
• Scaffold ID: Ga0114910_1005451
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5131
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.02
  • Long. (^o): 8.37
  • Depth (m): 2641

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094397	Metagenome	106	Y
F099891	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114910_100545110	F094397	GGAG	MKKRKNINGNFRGWEDIFFIKIKKGLNKFFESPFKRGKK*
Ga0114910_100545111	F099891	N/A	DNMKPLELNEPVFDGEPLLSRKNGKYRIDEKHFALMFLEAFQNEDKITGELAPLFTRVEQMIGIPKSTLGDWWRNREDIMSQRATVLHQGLNYVSTAMMVEMMRMAQAMATIDYKEMVNGKPQDMHNFISLFNTMINKFRLLNNQSTSNVAHAHEVELVIPD*